Edit a study edit open study Failure/Error: expect(page).to have_content('Your study has been updated') expected to find text "Your study has been updated" in "Test\nStudies\nProjects\nAdmin\nUAT\nPipelines\nBatches\nLabwhere Reception\nLab View\nLab search\nReport Fails\nBarcode\nProject\nStudy\nSample\nLabware\nAssetGroup\nRequest\nSupplier\nSubmission\nAll\nStudy 1 Edit\nEdit your study. Required fields are marked with .\nStudy owner name\nSelect an owner...\nProperties\nFaculty Sponsor\nFaculty Sponsor 1\nProgram\nGeneral\nNumber of gigabases per sample (minimum 0.15)\nPrelim ID\nPrelim ID\nReference genome\nReferenceGenome1\nTitleENA requirement\nTitle of the study as would be used in a publication.\nStudy TypeENA requirement\nNot specified\nStudy descriptionENA requirement\nSome study on something\nPlease choose one of the following 2 standard statements to be included with your data submissions (one or the other, depending on the study). If you use the second statement, replace [doi or ref] by a reference or doi for your publication:\n\nThis data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see http://www.sanger.ac.uk/datasharing/\n\nOR\n\nThis data has been described in the following article [doi or ref] and its further analysis can be freely submitted for publication. For information on the proper use of data shared by the Wellcome Trust Sanger Institute (including information on acknowledgement), please see http://www.sanger.ac.uk/datasharing/\nIf applicable, include a brief description of any restrictions on data usage, e.g. 'For AIDS-related research only'\nAbstractENA requirement\nBriefly describes the goals, purpose, and scope of the Study. This need not be listed if it can be inherited from a referenced publication. For managed access studies, please bear in mind it’s this text in the Abstract section that will be publicly visible on the EGA website.\nStudy Visibility\nStudy VisibilityENA requirement\nHold\nPublic\nMake this ENA project public immediately.\nDo any of the samples in this study contain human DNA?\nDo any of the samples in this study contain human DNA?\nYes\nNo\nIf they do, you will be required to upload the relevant documents. This does not apply to samples that are going to have the Human DNA removed prior to analysis.\nDoes this study contain samples that are contaminated with human DNA which must be removed prior to analysis?\nDoes this study contain samples that are contaminated with human DNA which must be removed prior to analysis?\nYes\nNo\nUsually only applicable to pathogen research when human DNA will not be sequenced and therefore does not require ethical approval.\nAre all the samples to be used in this study commercially available, unlinked anonymised cell-lines?\nAre all the samples to be used in this study commercially available, unlinked anonymised cell-lines?\nYes\nNo\nAre all the samples to be used in this study commercially available, anonymised cell-lines or DNA/RNA from commercially available, anonymised cell-lines?\nDoes this study require the removal of X chromosome and autosome sequence?\nDoes this study require the removal of X chromosome and autosome sequence?\nYes\nNo\nApplicable for studies where only mtDNA and Y-chromosomal data will be submitted to EGA.\nDoes this study require y chromosome data to be separated from x and autosomal data before archival?\nApplicable for studies where Y-chromosome data will not be submitted to the EGA, or will be submitted separately from autosomal sequence.\nENA Project IDENA (see help)\nThe required PROJECT_ID accession is generated by the Genome Project database at NCBI and will be valid also at the other archival institutions. Enter 0 if the project id is unknown or not assigned.\nENA Study Accession Numbersee help\nData Release accession Number. Will be filled automatically during submission process. Provide ONLY if the project has already been submitted to EBI.\nStudy na

Edit a study add external customer information Failure/Error: expect(page).to have_content('Your study has been updated') expected to find text "Your study has been updated" in "Test\nStudies\nProjects\nAdmin\nUAT\nPipelines\nBatches\nLabwhere Reception\nLab View\nLab search\nReport Fails\nBarcode\nProject\nStudy\nSample\nLabware\nAssetGroup\nRequest\nSupplier\nSubmission\nAll\nStudy 1 Edit\nEdit your study. Required fields are marked with .\nStudy owner name\nSelect an owner...\nProperties\nFaculty Sponsor\nFaculty Sponsor 1\nProgram\nGeneral\nNumber of gigabases per sample (minimum 0.15)\nPrelim ID\nPrelim ID\nReference genome\nReferenceGenome1\nTitleENA requirement\nTitle of the study as would be used in a publication.\nStudy TypeENA requirement\nNot specified\nStudy descriptionENA requirement\nSome study on something\nPlease choose one of the following 2 standard statements to be included with your data submissions (one or the other, depending on the study). If you use the second statement, replace [doi or ref] by a reference or doi for your publication:\n\nThis data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see http://www.sanger.ac.uk/datasharing/\n\nOR\n\nThis data has been described in the following article [doi or ref] and its further analysis can be freely submitted for publication. For information on the proper use of data shared by the Wellcome Trust Sanger Institute (including information on acknowledgement), please see http://www.sanger.ac.uk/datasharing/\nIf applicable, include a brief description of any restrictions on data usage, e.g. 'For AIDS-related research only'\nAbstractENA requirement\nBriefly describes the goals, purpose, and scope of the Study. This need not be listed if it can be inherited from a referenced publication. For managed access studies, please bear in mind it’s this text in the Abstract section that will be publicly visible on the EGA website.\nStudy Visibility\nStudy VisibilityENA requirement\nHold\nPublic\nMake this ENA project public immediately.\nDo any of the samples in this study contain human DNA?\nDo any of the samples in this study contain human DNA?\nYes\nNo\nIf they do, you will be required to upload the relevant documents. This does not apply to samples that are going to have the Human DNA removed prior to analysis.\nDoes this study contain samples that are contaminated with human DNA which must be removed prior to analysis?\nDoes this study contain samples that are contaminated with human DNA which must be removed prior to analysis?\nYes\nNo\nUsually only applicable to pathogen research when human DNA will not be sequenced and therefore does not require ethical approval.\nAre all the samples to be used in this study commercially available, unlinked anonymised cell-lines?\nAre all the samples to be used in this study commercially available, unlinked anonymised cell-lines?\nYes\nNo\nAre all the samples to be used in this study commercially available, anonymised cell-lines or DNA/RNA from commercially available, anonymised cell-lines?\nDoes this study require the removal of X chromosome and autosome sequence?\nDoes this study require the removal of X chromosome and autosome sequence?\nYes\nNo\nApplicable for studies where only mtDNA and Y-chromosomal data will be submitted to EGA.\nDoes this study require y chromosome data to be separated from x and autosomal data before archival?\nApplicable for studies where Y-chromosome data will not be submitted to the EGA, or will be submitted separately from autosomal sequence.\nENA Project IDENA (see help)\nThe required PROJECT_ID accession is generated by the Genome Project database at NCBI and will be valid also at the other archival institutions. Enter 0 if the project id is unknown or not assigned.\nENA Study Accession Numbersee help\nData Release accession Number. Will be filled automatically during submission process. Provide ONLY if the project has already been submitted

Edit a study when data release strategy is Not Applicable does not error when setting strategy to Open Failure/Error: expect(page).to have_content('Your study has been updated') expected to find text "Your study has been updated" in "Test\nStudies\nProjects\nAdmin\nUAT\nPipelines\nBatches\nLabwhere Reception\nLab View\nLab search\nReport Fails\nBarcode\nProject\nStudy\nSample\nLabware\nAssetGroup\nRequest\nSupplier\nSubmission\nAll\nStudy: Never Edit\nEdit your study. Required fields are marked with .\nStudy owner name\nSelect an owner...\nProperties\nFaculty Sponsor\nFaculty Sponsor 1\nProgram\nGeneral\nNumber of gigabases per sample (minimum 0.15)\nPrelim ID\nPrelim ID\nReference genome\nReferenceGenome1\nTitleENA requirement\nTitle of the study as would be used in a publication.\nStudy TypeENA requirement\nNot specified\nStudy descriptionENA requirement\nSome study on something\nPlease choose one of the following 2 standard statements to be included with your data submissions (one or the other, depending on the study). If you use the second statement, replace [doi or ref] by a reference or doi for your publication:\n\nThis data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see http://www.sanger.ac.uk/datasharing/\n\nOR\n\nThis data has been described in the following article [doi or ref] and its further analysis can be freely submitted for publication. For information on the proper use of data shared by the Wellcome Trust Sanger Institute (including information on acknowledgement), please see http://www.sanger.ac.uk/datasharing/\nIf applicable, include a brief description of any restrictions on data usage, e.g. 'For AIDS-related research only'\nAbstractENA requirement\nBriefly describes the goals, purpose, and scope of the Study. This need not be listed if it can be inherited from a referenced publication. For managed access studies, please bear in mind it’s this text in the Abstract section that will be publicly visible on the EGA website.\nStudy Visibility\nStudy VisibilityENA requirement\nHold\nPublic\nMake this ENA project public immediately.\nDo any of the samples in this study contain human DNA?\nDo any of the samples in this study contain human DNA?\nYes\nNo\nIf they do, you will be required to upload the relevant documents. This does not apply to samples that are going to have the Human DNA removed prior to analysis.\nDoes this study contain samples that are contaminated with human DNA which must be removed prior to analysis?\nDoes this study contain samples that are contaminated with human DNA which must be removed prior to analysis?\nYes\nNo\nUsually only applicable to pathogen research when human DNA will not be sequenced and therefore does not require ethical approval.\nAre all the samples to be used in this study commercially available, unlinked anonymised cell-lines?\nAre all the samples to be used in this study commercially available, unlinked anonymised cell-lines?\nYes\nNo\nAre all the samples to be used in this study commercially available, anonymised cell-lines or DNA/RNA from commercially available, anonymised cell-lines?\nDoes this study require the removal of X chromosome and autosome sequence?\nDoes this study require the removal of X chromosome and autosome sequence?\nYes\nNo\nApplicable for studies where only mtDNA and Y-chromosomal data will be submitted to EGA.\nDoes this study require y chromosome data to be separated from x and autosomal data before archival?\nApplicable for studies where Y-chromosome data will not be submitted to the EGA, or will be submitted separately from autosomal sequence.\nENA Project IDENA (see help)\nThe required PROJECT_ID accession is generated by the Genome Project database at NCBI and will be valid also at the other archival institutions. Enter 0 if the project id is unknown or not assigned.\nENA Study Accession Numbersee help\nData Release accession Number. Will be filled automatically during submission pr

View study properties Filtering by asset type Failure/Error: super Capybara::ElementNotFound: Unable to find css "#summary"

View study properties Multiple requests link to the summary Failure/Error: expect(page).to have_link('2', title: "#{library_tube.human_barcode} failed") expected to find link "2" but there were no matches

View study properties Single requests link directly to the request Failure/Error: expect(page).to have_link('1', title: "#{library_tube.human_barcode} passed") expected to find link "1" but there were no matches

Manage a study Rename a study Failure/Error: expect(page).to have_content('Updated name') expected to find text "Updated name" in "Test\nStudies\nProjects\nAdmin\nUAT\nPipelines\nBatches\nLabwhere Reception\nLab View\nLab search\nReport Fails\nBarcode\nProject\nStudy\nSample\nLabware\nAssetGroup\nRequest\nSupplier\nSubmission\nAll\nManage Study Original name\nYou can update the approval status for a study here.\nStudy : Original name\nStudy 3496 · Created on November 23, 2024 05:07 · Active\nStudy state\nState\nPending\nActive\nInactive\nContacts\nView Study Contacts\nProperties\nStudy name\nRename the study\nFaculty Sponsor\nFaculty Sponsor 1\nProgram\nGeneral\nNumber of gigabases per sample (minimum 0.15)\nPrelim ID\nPrelim ID\nReference genome\nReferenceGenome1\nTitleENA requirement\nTitle of the study as would be used in a publication.\nStudy TypeENA requirement\nNot specified\nStudy descriptionENA requirement\nSome study on something\nPlease choose one of the following 2 standard statements to be included with your data submissions (one or the other, depending on the study). If you use the second statement, replace [doi or ref] by a reference or doi for your publication:\n\nThis data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see http://www.sanger.ac.uk/datasharing/\n\nOR\n\nThis data has been described in the following article [doi or ref] and its further analysis can be freely submitted for publication. For information on the proper use of data shared by the Wellcome Trust Sanger Institute (including information on acknowledgement), please see http://www.sanger.ac.uk/datasharing/\nIf applicable, include a brief description of any restrictions on data usage, e.g. 'For AIDS-related research only'\nAbstractENA requirement\nBriefly describes the goals, purpose, and scope of the Study. This need not be listed if it can be inherited from a referenced publication. For managed access studies, please bear in mind it’s this text in the Abstract section that will be publicly visible on the EGA website.\nStudy Visibility\nStudy VisibilityENA requirement\nHold\nPublic\nMake this ENA project public immediately.\nDo any of the samples in this study contain human DNA?\nDo any of the samples in this study contain human DNA?\nYes\nNo\nIf they do, you will be required to upload the relevant documents. This does not apply to samples that are going to have the Human DNA removed prior to analysis.\nDoes this study contain samples that are contaminated with human DNA which must be removed prior to analysis?\nDoes this study contain samples that are contaminated with human DNA which must be removed prior to analysis?\nYes\nNo\nUsually only applicable to pathogen research when human DNA will not be sequenced and therefore does not require ethical approval.\nAre all the samples to be used in this study commercially available, unlinked anonymised cell-lines?\nAre all the samples to be used in this study commercially available, unlinked anonymised cell-lines?\nYes\nNo\nAre all the samples to be used in this study commercially available, anonymised cell-lines or DNA/RNA from commercially available, anonymised cell-lines?\nDoes this study require the removal of X chromosome and autosome sequence?\nDoes this study require the removal of X chromosome and autosome sequence?\nYes\nNo\nApplicable for studies where only mtDNA and Y-chromosomal data will be submitted to EGA.\nDoes this study require y chromosome data to be separated from x and autosomal data before archival?\nApplicable for studies where Y-chromosome data will not be submitted to the EGA, or will be submitted separately from autosomal sequence.\nENA Project IDENA (see help)\nThe required PROJECT_ID accession is generated by the Genome Project database at NCBI and will be valid also at the other archival institutions. Enter 0 if the project id is unknown or not assigned.\nENA Study Accession Numbersee help\nData Release accessio

Process completed with exit code 1.

Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@v2. Please update your workflow to use the latest version of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-09-16-notice-of-upcoming-deprecations-and-changes-in-github-actions-services/

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/