Administrator edits study properties failed: expected to find text "Your study has been updated" in "Cucumber\nStudies\nProjects\nAdmin\nUAT\nPipelines\nBatches\nLabwhere Reception\nLab View\nLab search\nReport Fails\nBarcode\nProject\nStudy\nSample\nLabware\nAssetGroup\nRequest\nSupplier\nSubmission\nAll\nManage Study Study B\nYou can update the approval status for a study here.\nStudy : Study B\nStudy 3 · Created on February 07, 2025 19:02 · Active\nStudy state\nState\nPending\nActive\nInactive\nContacts\nView Study Contacts\nProperties\nStudy name\nRename the study\nFaculty Sponsor\nFaculty Sponsor 2\nUAT Faculty Sponsor\nProgram\nGeneral\nUAT\nNumber of gigabases per sample (minimum 0.15)\nPrelim ID\nPrelim ID\nReference genome\nNot suitable for alignment\nReferenceGenome2\nStudy Type\nCancer Genomics\nClone Sequencing\nEpigenetics\nExome Sequencing\nForensic or Paleo-genomics\nGene Regulation Study\nMetagenomics\nPooled Clone Sequencing\nPopulation Genomics\nResequencing\nSynthetic Genomics\nTraDIS\nTranscriptome Analysis\nUAT\nWhole Genome Sequencing\nTitleENA requirement\nTitle of the study as would be used in a publication.\nStudy descriptionENA requirement\nSome study on something\nAbstractENA requirement\nBriefly describes the goals, purpose, and scope of the Study. This need not be listed if it can be inherited from a referenced publication. For managed access studies, please bear in mind it’s this text in the Abstract section that will be publicly visible on the EGA website.\nStudy Visibility\nStudy VisibilityENA requirement\nHold\nPublic\nMake this ENA project public immediately.\nEBI Library StrategyENA requirement\nRNA-Seq\nChIP-Seq\nWGS\nWXS\nAMPLICON\nCLONE\nPOOLCLONE\nCLONEEND\nBisulfite-Seq\nMNase-Seq\nDNase-Hypersensitivity\nFAIRE-seq\nSELEX\nRIP-Seq\nChIA-PET\nOTHER\nEBI Library SourceENA requirement\nGENOMIC\nTRANSCRIPTOMIC\nMETAGENOMIC\nMETATRANSCRIPTOMIC\nSYNTHETIC\nVIRAL RNA\nOTHER\nEBI Library SelectionENA requirement\nRANDOM\nPCR\nRANDOM PCR\nRT-PCR\nHMPR\nMF\nCF-S\nCF-M\nCF-T\nMDA\nMSLL\ncDNA\nChIP\nMNase\nDNAse\nHybrid Selection\nReduced Representation\nRestriction Digest\n5-methylcytidine antibody\nMBD2 protein methyl-CpG binding domain\nDo any of the samples in this study contain human DNA?\nDo any of the samples in this study contain human DNA?\nYes\nNo\nIf they do, you will be required to upload the relevant documents. This does not apply to samples that are going to have the Human DNA removed prior to analysis.\nDoes this study contain samples that are contaminated with human DNA which must be removed prior to analysis?\nDoes this study contain samples that are contaminated with human DNA which must be removed prior to analysis?\nYes\nNo\nUsually only applicable to pathogen research when human DNA will not be sequenced and therefore does not require ethical approval.\nAre all the samples to be used in this study commercially available, unlinked anonymised cell-lines?\nAre all the samples to be used in this study commercially available, unlinked anonymised cell-lines?\nYes\nNo\nAre all the samples to be used in this study commercially available, anonymised cell-lines or DNA/RNA from commercially available, anonymised cell-lines?\nDoes this study require the removal of X chromosome and autosome sequence?\nDoes this study require the removal of X chromosome and autosome sequence?\nYes\nNo\nApplicable for studies where only mtDNA and Y-chromosomal data will be submitted to EGA.\nDoes this study require y chromosome data to be separated from x and autosomal data before archival?\nApplicable for studies where Y-chromosome data will not be submitted to the EGA, or will be submitted separately from autosomal sequence.\nENA Project IDENA (see help)\nThe required PROJECT_ID accession is generated by the Genome Project database at NCBI and will be valid also at the other archival institutions. Enter 0 if the project id is unknown or not assigned.\nENA Study Accession Numbersee help\nData Release accession Number. Will be filled automatically during submission process. Provide ONLY if the project ha

Data access coordinator edits study properties failed: expected to find text "Your study has been updated" in "Cucumber\nStudies\nProjects\nAdmin\nUAT\nPipelines\nBatches\nLabwhere Reception\nLab View\nLab search\nReport Fails\nBarcode\nProject\nStudy\nSample\nLabware\nAssetGroup\nRequest\nSupplier\nSubmission\nAll\nManage Study Study B\nYou can update the approval status for a study here.\nStudy : Study B\nStudy 4 · Created on February 07, 2025 19:03 · Active\nStudy state\nState\nPending\nActive\nInactive\nContacts\nView Study Contacts\nProperties\nStudy name\nRename the study\nFaculty Sponsor\nFaculty Sponsor 3\nUAT Faculty Sponsor\nProgram\nGeneral\nUAT\nNumber of gigabases per sample (minimum 0.15)\nPrelim ID\nPrelim ID\nReference genome\nNot suitable for alignment\nReferenceGenome3\nStudy Type\nCancer Genomics\nClone Sequencing\nEpigenetics\nExome Sequencing\nForensic or Paleo-genomics\nGene Regulation Study\nMetagenomics\nPooled Clone Sequencing\nPopulation Genomics\nResequencing\nSynthetic Genomics\nTraDIS\nTranscriptome Analysis\nUAT\nWhole Genome Sequencing\nTitleENA requirement\nTitle of the study as would be used in a publication.\nStudy descriptionENA requirement\nSome study on something\nAbstractENA requirement\nBriefly describes the goals, purpose, and scope of the Study. This need not be listed if it can be inherited from a referenced publication. For managed access studies, please bear in mind it’s this text in the Abstract section that will be publicly visible on the EGA website.\nStudy Visibility\nStudy VisibilityENA requirement\nHold\nPublic\nMake this ENA project public immediately.\nEBI Library StrategyENA requirement\nRNA-Seq\nChIP-Seq\nWGS\nWXS\nAMPLICON\nCLONE\nPOOLCLONE\nCLONEEND\nBisulfite-Seq\nMNase-Seq\nDNase-Hypersensitivity\nFAIRE-seq\nSELEX\nRIP-Seq\nChIA-PET\nOTHER\nEBI Library SourceENA requirement\nGENOMIC\nTRANSCRIPTOMIC\nMETAGENOMIC\nMETATRANSCRIPTOMIC\nSYNTHETIC\nVIRAL RNA\nOTHER\nEBI Library SelectionENA requirement\nRANDOM\nPCR\nRANDOM PCR\nRT-PCR\nHMPR\nMF\nCF-S\nCF-M\nCF-T\nMDA\nMSLL\ncDNA\nChIP\nMNase\nDNAse\nHybrid Selection\nReduced Representation\nRestriction Digest\n5-methylcytidine antibody\nMBD2 protein methyl-CpG binding domain\nDo any of the samples in this study contain human DNA?\nDo any of the samples in this study contain human DNA?\nYes\nNo\nIf they do, you will be required to upload the relevant documents. This does not apply to samples that are going to have the Human DNA removed prior to analysis.\nDoes this study contain samples that are contaminated with human DNA which must be removed prior to analysis?\nDoes this study contain samples that are contaminated with human DNA which must be removed prior to analysis?\nYes\nNo\nUsually only applicable to pathogen research when human DNA will not be sequenced and therefore does not require ethical approval.\nAre all the samples to be used in this study commercially available, unlinked anonymised cell-lines?\nAre all the samples to be used in this study commercially available, unlinked anonymised cell-lines?\nYes\nNo\nAre all the samples to be used in this study commercially available, anonymised cell-lines or DNA/RNA from commercially available, anonymised cell-lines?\nDoes this study require the removal of X chromosome and autosome sequence?\nDoes this study require the removal of X chromosome and autosome sequence?\nYes\nNo\nApplicable for studies where only mtDNA and Y-chromosomal data will be submitted to EGA.\nDoes this study require y chromosome data to be separated from x and autosomal data before archival?\nApplicable for studies where Y-chromosome data will not be submitted to the EGA, or will be submitted separately from autosomal sequence.\nENA Project IDENA (see help)\nThe required PROJECT_ID accession is generated by the Genome Project database at NCBI and will be valid also at the other archival institutions. Enter 0 if the project id is unknown or not assigned.\nENA Study Accession Numbersee help\nData Release accession Number. Will be filled automatically during submission process. Provide ONLY if the

Administrator edits study ethical approval failed: expected to find text "Your study has been updated" in "Cucumber\nStudies\nProjects\nAdmin\nUAT\nPipelines\nBatches\nLabwhere Reception\nLab View\nLab search\nReport Fails\nBarcode\nProject\nStudy\nSample\nLabware\nAssetGroup\nRequest\nSupplier\nSubmission\nAll\nManage Study Study B\nYou can update the approval status for a study here.\nStudy : Study B\nStudy 5 · Created on February 07, 2025 19:03 · Active\nStudy state\nState\nPending\nActive\nInactive\nContacts\nView Study Contacts\nProperties\nStudy name\nRename the study\nFaculty Sponsor\nFaculty Sponsor 4\nUAT Faculty Sponsor\nProgram\nGeneral\nUAT\nNumber of gigabases per sample (minimum 0.15)\nPrelim ID\nPrelim ID\nReference genome\nNot suitable for alignment\nReferenceGenome4\nStudy Type\nCancer Genomics\nClone Sequencing\nEpigenetics\nExome Sequencing\nForensic or Paleo-genomics\nGene Regulation Study\nMetagenomics\nPooled Clone Sequencing\nPopulation Genomics\nResequencing\nSynthetic Genomics\nTraDIS\nTranscriptome Analysis\nUAT\nWhole Genome Sequencing\nTitleENA requirement\nTitle of the study as would be used in a publication.\nStudy descriptionENA requirement\nSome study on something\nAbstractENA requirement\nBriefly describes the goals, purpose, and scope of the Study. This need not be listed if it can be inherited from a referenced publication. For managed access studies, please bear in mind it’s this text in the Abstract section that will be publicly visible on the EGA website.\nStudy Visibility\nStudy VisibilityENA requirement\nHold\nPublic\nMake this ENA project public immediately.\nEBI Library StrategyENA requirement\nRNA-Seq\nChIP-Seq\nWGS\nWXS\nAMPLICON\nCLONE\nPOOLCLONE\nCLONEEND\nBisulfite-Seq\nMNase-Seq\nDNase-Hypersensitivity\nFAIRE-seq\nSELEX\nRIP-Seq\nChIA-PET\nOTHER\nEBI Library SourceENA requirement\nGENOMIC\nTRANSCRIPTOMIC\nMETAGENOMIC\nMETATRANSCRIPTOMIC\nSYNTHETIC\nVIRAL RNA\nOTHER\nEBI Library SelectionENA requirement\nRANDOM\nPCR\nRANDOM PCR\nRT-PCR\nHMPR\nMF\nCF-S\nCF-M\nCF-T\nMDA\nMSLL\ncDNA\nChIP\nMNase\nDNAse\nHybrid Selection\nReduced Representation\nRestriction Digest\n5-methylcytidine antibody\nMBD2 protein methyl-CpG binding domain\nDo any of the samples in this study contain human DNA?\nDo any of the samples in this study contain human DNA?\nYes\nNo\nIf they do, you will be required to upload the relevant documents. This does not apply to samples that are going to have the Human DNA removed prior to analysis.\nDoes this study contain samples that are contaminated with human DNA which must be removed prior to analysis?\nDoes this study contain samples that are contaminated with human DNA which must be removed prior to analysis?\nYes\nNo\nUsually only applicable to pathogen research when human DNA will not be sequenced and therefore does not require ethical approval.\nAre all the samples to be used in this study commercially available, unlinked anonymised cell-lines?\nAre all the samples to be used in this study commercially available, unlinked anonymised cell-lines?\nYes\nNo\nAre all the samples to be used in this study commercially available, anonymised cell-lines or DNA/RNA from commercially available, anonymised cell-lines?\nDoes this study require the removal of X chromosome and autosome sequence?\nDoes this study require the removal of X chromosome and autosome sequence?\nYes\nNo\nApplicable for studies where only mtDNA and Y-chromosomal data will be submitted to EGA.\nDoes this study require y chromosome data to be separated from x and autosomal data before archival?\nApplicable for studies where Y-chromosome data will not be submitted to the EGA, or will be submitted separately from autosomal sequence.\nENA Project IDENA (see help)\nThe required PROJECT_ID accession is generated by the Genome Project database at NCBI and will be valid also at the other archival institutions. Enter 0 if the project id is unknown or not assigned.\nENA Study Accession Numbersee help\nData Release accession Number. Will be filled automatically during submission process. Provide ONLY if the proj

I should not be able to select inactive libraries failed: The "Bait library" should not be labeled as 'required' (class="required")

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3 source plates should be ordered by bed number and scanner has CR suffix failed: undefined method `reject' for nil

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Managing a study without attaching a file failed: expected to find text "Your study has been updated" in "Cucumber\nStudies\nProjects\nAdmin\nUAT\nPipelines\nBatches\nLabwhere Reception\nLab View\nLab search\nReport Fails\nBarcode\nProject\nStudy\nSample\nLabware\nAssetGroup\nRequest\nSupplier\nSubmission\nAll\nManage Study Study testing nil documents\nYou can update the approval status for a study here.\nStudy : Study testing nil documents\nStudy 228 · Created on February 07, 2025 19:04 · Active\nStudy state\nState\nPending\nActive\nInactive\nContacts\nView Study Contacts\nProperties\nStudy name\nRename the study\nFaculty Sponsor\nFaculty Sponsor 197\nUAT Faculty Sponsor\nProgram\nGeneral\nUAT\nNumber of gigabases per sample (minimum 0.15)\nPrelim ID\nPrelim ID\nReference genome\nNot suitable for alignment\nReferenceGenome197\nStudy Type\nCancer Genomics\nClone Sequencing\nEpigenetics\nExome Sequencing\nForensic or Paleo-genomics\nGene Regulation Study\nMetagenomics\nPooled Clone Sequencing\nPopulation Genomics\nResequencing\nSynthetic Genomics\nTraDIS\nTranscriptome Analysis\nUAT\nWhole Genome Sequencing\nTitleENA requirement\nTitle of the study as would be used in a publication.\nStudy descriptionENA requirement\nSome study on something\nAbstractENA requirement\nBriefly describes the goals, purpose, and scope of the Study. This need not be listed if it can be inherited from a referenced publication. For managed access studies, please bear in mind it’s this text in the Abstract section that will be publicly visible on the EGA website.\nStudy Visibility\nStudy VisibilityENA requirement\nHold\nPublic\nMake this ENA project public immediately.\nEBI Library StrategyENA requirement\nRNA-Seq\nChIP-Seq\nWGS\nWXS\nAMPLICON\nCLONE\nPOOLCLONE\nCLONEEND\nBisulfite-Seq\nMNase-Seq\nDNase-Hypersensitivity\nFAIRE-seq\nSELEX\nRIP-Seq\nChIA-PET\nOTHER\nEBI Library SourceENA requirement\nGENOMIC\nTRANSCRIPTOMIC\nMETAGENOMIC\nMETATRANSCRIPTOMIC\nSYNTHETIC\nVIRAL RNA\nOTHER\nEBI Library SelectionENA requirement\nRANDOM\nPCR\nRANDOM PCR\nRT-PCR\nHMPR\nMF\nCF-S\nCF-M\nCF-T\nMDA\nMSLL\ncDNA\nChIP\nMNase\nDNAse\nHybrid Selection\nReduced Representation\nRestriction Digest\n5-methylcytidine antibody\nMBD2 protein methyl-CpG binding domain\nDo any of the samples in this study contain human DNA?\nDo any of the samples in this study contain human DNA?\nYes\nNo\nIf they do, you will be required to upload the relevant documents. This does not apply to samples that are going to have the Human DNA removed prior to analysis.\nDoes this study contain samples that are contaminated with human DNA which must be removed prior to analysis?\nDoes this study contain samples that are contaminated with human DNA which must be removed prior to analysis?\nYes\nNo\nUsually only applicable to pathogen research when human DNA will not be sequenced and therefore does not require ethical approval.\nAre all the samples to be used in this study commercially available, unlinked anonymised cell-lines?\nAre all the samples to be used in this study commercially available, unlinked anonymised cell-lines?\nYes\nNo\nAre all the samples to be used in this study commercially available, anonymised cell-lines or DNA/RNA from commercially available, anonymised cell-lines?\nDoes this study require the removal of X chromosome and autosome sequence?\nDoes this study require the removal of X chromosome and autosome sequence?\nYes\nNo\nApplicable for studies where only mtDNA and Y-chromosomal data will be submitted to EGA.\nDoes this study require y chromosome data to be separated from x and autosomal data before archival?\nApplicable for studies where Y-chromosome data will not be submitted to the EGA, or will be submitted separately from autosomal sequence.\nENA Project IDENA (see help)\nThe required PROJECT_ID accession is generated by the Genome Project database at NCBI and will be valid also at the other archival institutions. Enter 0 if the project id is unknown or not assigned.\nENA Study Accession Numbersee help\nData Release accession Number. Will be filled automatically during

Managing a study and attaching a file failed: expected to find text "Your study has been updated" in "Cucumber\nStudies\nProjects\nAdmin\nUAT\nPipelines\nBatches\nLabwhere Reception\nLab View\nLab search\nReport Fails\nBarcode\nProject\nStudy\nSample\nLabware\nAssetGroup\nRequest\nSupplier\nSubmission\nAll\nManage Study Study testing nil documents\nYou can update the approval status for a study here.\nStudy : Study testing nil documents\nStudy 229 · Created on February 07, 2025 19:04 · Active\nStudy state\nState\nPending\nActive\nInactive\nContacts\nView Study Contacts\nProperties\nStudy name\nRename the study\nFaculty Sponsor\nFaculty Sponsor 198\nUAT Faculty Sponsor\nProgram\nGeneral\nUAT\nNumber of gigabases per sample (minimum 0.15)\nPrelim ID\nPrelim ID\nReference genome\nNot suitable for alignment\nReferenceGenome198\nStudy Type\nCancer Genomics\nClone Sequencing\nEpigenetics\nExome Sequencing\nForensic or Paleo-genomics\nGene Regulation Study\nMetagenomics\nPooled Clone Sequencing\nPopulation Genomics\nResequencing\nSynthetic Genomics\nTraDIS\nTranscriptome Analysis\nUAT\nWhole Genome Sequencing\nTitleENA requirement\nTitle of the study as would be used in a publication.\nStudy descriptionENA requirement\nSome study on something\nAbstractENA requirement\nBriefly describes the goals, purpose, and scope of the Study. This need not be listed if it can be inherited from a referenced publication. For managed access studies, please bear in mind it’s this text in the Abstract section that will be publicly visible on the EGA website.\nStudy Visibility\nStudy VisibilityENA requirement\nHold\nPublic\nMake this ENA project public immediately.\nEBI Library StrategyENA requirement\nRNA-Seq\nChIP-Seq\nWGS\nWXS\nAMPLICON\nCLONE\nPOOLCLONE\nCLONEEND\nBisulfite-Seq\nMNase-Seq\nDNase-Hypersensitivity\nFAIRE-seq\nSELEX\nRIP-Seq\nChIA-PET\nOTHER\nEBI Library SourceENA requirement\nGENOMIC\nTRANSCRIPTOMIC\nMETAGENOMIC\nMETATRANSCRIPTOMIC\nSYNTHETIC\nVIRAL RNA\nOTHER\nEBI Library SelectionENA requirement\nRANDOM\nPCR\nRANDOM PCR\nRT-PCR\nHMPR\nMF\nCF-S\nCF-M\nCF-T\nMDA\nMSLL\ncDNA\nChIP\nMNase\nDNAse\nHybrid Selection\nReduced Representation\nRestriction Digest\n5-methylcytidine antibody\nMBD2 protein methyl-CpG binding domain\nDo any of the samples in this study contain human DNA?\nDo any of the samples in this study contain human DNA?\nYes\nNo\nIf they do, you will be required to upload the relevant documents. This does not apply to samples that are going to have the Human DNA removed prior to analysis.\nDoes this study contain samples that are contaminated with human DNA which must be removed prior to analysis?\nDoes this study contain samples that are contaminated with human DNA which must be removed prior to analysis?\nYes\nNo\nUsually only applicable to pathogen research when human DNA will not be sequenced and therefore does not require ethical approval.\nAre all the samples to be used in this study commercially available, unlinked anonymised cell-lines?\nAre all the samples to be used in this study commercially available, unlinked anonymised cell-lines?\nYes\nNo\nAre all the samples to be used in this study commercially available, anonymised cell-lines or DNA/RNA from commercially available, anonymised cell-lines?\nDoes this study require the removal of X chromosome and autosome sequence?\nDoes this study require the removal of X chromosome and autosome sequence?\nYes\nNo\nApplicable for studies where only mtDNA and Y-chromosomal data will be submitted to EGA.\nDoes this study require y chromosome data to be separated from x and autosomal data before archival?\nApplicable for studies where Y-chromosome data will not be submitted to the EGA, or will be submitted separately from autosomal sequence.\nENA Project IDENA (see help)\nThe required PROJECT_ID accession is generated by the Genome Project database at NCBI and will be valid also at the other archival institutions. Enter 0 if the project id is unknown or not assigned.\nENA Study Accession Numbersee help\nData Release accession Number. Will be filled automatically during sub

The plates doesn't need any buffer. nothing should be printed failed: undefined method `reject' for nil

One plate needs a buffer. buffer required should be printed failed: undefined method `reject' for nil

The operation was canceled.

View study properties Filtering by asset type Failure/Error: super Capybara::ElementNotFound: Unable to find css "#summary"

View study properties Multiple requests link to the summary Failure/Error: expect(page).to have_link('2', title: "#{library_tube.human_barcode} failed") expected to find link "2" but there were no matches

View study properties Single requests link directly to the request Failure/Error: expect(page).to have_link('1', title: "#{library_tube.human_barcode} passed") expected to find link "1" but there were no matches

Generate a bulk submission spreadsheet Generate a basic spreadsheet Failure/Error: super Capybara::ElementNotFound: Unable to find field "Fragment size required (from)" that is not disabled

Generate a bulk submission spreadsheet with a primer panel submission populates the primer panel column Failure/Error: super Capybara::ElementNotFound: Unable to find select box "Primer panel" that is not disabled and Unable to find input box with datalist completion "Primer panel" that is not disabled

Generate a bulk submission spreadsheet with a bait_library submission populates the primer panel column Failure/Error: super Capybara::ElementNotFound: Unable to find select box "Bait library" that is not disabled and Unable to find input box with datalist completion "Bait library" that is not disabled

Edit a study add external customer information Failure/Error: expect(page).to have_content('Your study has been updated') expected to find text "Your study has been updated" in "Test\nStudies\nProjects\nAdmin\nUAT\nPipelines\nBatches\nLabwhere Reception\nLab View\nLab search\nReport Fails\nBarcode\nProject\nStudy\nSample\nLabware\nAssetGroup\nRequest\nSupplier\nSubmission\nAll\nStudy 1 Edit\nEdit your study. Required fields are marked with .\nStudy owner name\nSelect an owner...\nProperties\nFaculty Sponsor\nFaculty Sponsor 1\nProgram\nGeneral\nNumber of gigabases per sample (minimum 0.15)\nPrelim ID\nPrelim ID\nReference genome\nReferenceGenome1\nStudy Type\nNot specified\nTitleENA requirement\nTitle of the study as would be used in a publication.\nStudy descriptionENA requirement\nSome study on something\nAbstractENA requirement\nBriefly describes the goals, purpose, and scope of the Study. This need not be listed if it can be inherited from a referenced publication. For managed access studies, please bear in mind it’s this text in the Abstract section that will be publicly visible on the EGA website.\nStudy Visibility\nStudy VisibilityENA requirement\nHold\nPublic\nMake this ENA project public immediately.\nEBI Library StrategyENA requirement\nRNA-Seq\nChIP-Seq\nWGS\nWXS\nAMPLICON\nCLONE\nPOOLCLONE\nCLONEEND\nBisulfite-Seq\nMNase-Seq\nDNase-Hypersensitivity\nFAIRE-seq\nSELEX\nRIP-Seq\nChIA-PET\nOTHER\nEBI Library SourceENA requirement\nGENOMIC\nTRANSCRIPTOMIC\nMETAGENOMIC\nMETATRANSCRIPTOMIC\nSYNTHETIC\nVIRAL RNA\nOTHER\nEBI Library SelectionENA requirement\nRANDOM\nPCR\nRANDOM PCR\nRT-PCR\nHMPR\nMF\nCF-S\nCF-M\nCF-T\nMDA\nMSLL\ncDNA\nChIP\nMNase\nDNAse\nHybrid Selection\nReduced Representation\nRestriction Digest\n5-methylcytidine antibody\nMBD2 protein methyl-CpG binding domain\nDo any of the samples in this study contain human DNA?\nDo any of the samples in this study contain human DNA?\nYes\nNo\nIf they do, you will be required to upload the relevant documents. This does not apply to samples that are going to have the Human DNA removed prior to analysis.\nDoes this study contain samples that are contaminated with human DNA which must be removed prior to analysis?\nDoes this study contain samples that are contaminated with human DNA which must be removed prior to analysis?\nYes\nNo\nUsually only applicable to pathogen research when human DNA will not be sequenced and therefore does not require ethical approval.\nAre all the samples to be used in this study commercially available, unlinked anonymised cell-lines?\nAre all the samples to be used in this study commercially available, unlinked anonymised cell-lines?\nYes\nNo\nAre all the samples to be used in this study commercially available, anonymised cell-lines or DNA/RNA from commercially available, anonymised cell-lines?\nDoes this study require the removal of X chromosome and autosome sequence?\nDoes this study require the removal of X chromosome and autosome sequence?\nYes\nNo\nApplicable for studies where only mtDNA and Y-chromosomal data will be submitted to EGA.\nDoes this study require y chromosome data to be separated from x and autosomal data before archival?\nApplicable for studies where Y-chromosome data will not be submitted to the EGA, or will be submitted separately from autosomal sequence.\nENA Project IDENA (see help)\nThe required PROJECT_ID accession is generated by the Genome Project database at NCBI and will be valid also at the other archival institutions. Enter 0 if the project id is unknown or not assigned.\nENA Study Accession Numbersee help\nData Release accession Number. Will be filled automatically during submission process. Provide ONLY if the project has already been submitted to EBI.\nStudy name abbreviation\nOptional abbreviation which is used when space is limited, such as on barcode labels\nAlignments in BAM\nIf you uncheck this, then you will not have alignments added to your BAM files for any runs created in this study. Also, please be aware, that unless you choose a reference genome, the reference that the alignments will be m

Edit a study edit open study Failure/Error: expect(page).to have_content('Your study has been updated') expected to find text "Your study has been updated" in "Test\nStudies\nProjects\nAdmin\nUAT\nPipelines\nBatches\nLabwhere Reception\nLab View\nLab search\nReport Fails\nBarcode\nProject\nStudy\nSample\nLabware\nAssetGroup\nRequest\nSupplier\nSubmission\nAll\nStudy 1 Edit\nEdit your study. Required fields are marked with .\nStudy owner name\nSelect an owner...\nProperties\nFaculty Sponsor\nFaculty Sponsor 1\nProgram\nGeneral\nNumber of gigabases per sample (minimum 0.15)\nPrelim ID\nPrelim ID\nReference genome\nReferenceGenome1\nStudy Type\nNot specified\nTitleENA requirement\nTitle of the study as would be used in a publication.\nStudy descriptionENA requirement\nSome study on something\nAbstractENA requirement\nBriefly describes the goals, purpose, and scope of the Study. This need not be listed if it can be inherited from a referenced publication. For managed access studies, please bear in mind it’s this text in the Abstract section that will be publicly visible on the EGA website.\nStudy Visibility\nStudy VisibilityENA requirement\nHold\nPublic\nMake this ENA project public immediately.\nEBI Library StrategyENA requirement\nRNA-Seq\nChIP-Seq\nWGS\nWXS\nAMPLICON\nCLONE\nPOOLCLONE\nCLONEEND\nBisulfite-Seq\nMNase-Seq\nDNase-Hypersensitivity\nFAIRE-seq\nSELEX\nRIP-Seq\nChIA-PET\nOTHER\nEBI Library SourceENA requirement\nGENOMIC\nTRANSCRIPTOMIC\nMETAGENOMIC\nMETATRANSCRIPTOMIC\nSYNTHETIC\nVIRAL RNA\nOTHER\nEBI Library SelectionENA requirement\nRANDOM\nPCR\nRANDOM PCR\nRT-PCR\nHMPR\nMF\nCF-S\nCF-M\nCF-T\nMDA\nMSLL\ncDNA\nChIP\nMNase\nDNAse\nHybrid Selection\nReduced Representation\nRestriction Digest\n5-methylcytidine antibody\nMBD2 protein methyl-CpG binding domain\nDo any of the samples in this study contain human DNA?\nDo any of the samples in this study contain human DNA?\nYes\nNo\nIf they do, you will be required to upload the relevant documents. This does not apply to samples that are going to have the Human DNA removed prior to analysis.\nDoes this study contain samples that are contaminated with human DNA which must be removed prior to analysis?\nDoes this study contain samples that are contaminated with human DNA which must be removed prior to analysis?\nYes\nNo\nUsually only applicable to pathogen research when human DNA will not be sequenced and therefore does not require ethical approval.\nAre all the samples to be used in this study commercially available, unlinked anonymised cell-lines?\nAre all the samples to be used in this study commercially available, unlinked anonymised cell-lines?\nYes\nNo\nAre all the samples to be used in this study commercially available, anonymised cell-lines or DNA/RNA from commercially available, anonymised cell-lines?\nDoes this study require the removal of X chromosome and autosome sequence?\nDoes this study require the removal of X chromosome and autosome sequence?\nYes\nNo\nApplicable for studies where only mtDNA and Y-chromosomal data will be submitted to EGA.\nDoes this study require y chromosome data to be separated from x and autosomal data before archival?\nApplicable for studies where Y-chromosome data will not be submitted to the EGA, or will be submitted separately from autosomal sequence.\nENA Project IDENA (see help)\nThe required PROJECT_ID accession is generated by the Genome Project database at NCBI and will be valid also at the other archival institutions. Enter 0 if the project id is unknown or not assigned.\nENA Study Accession Numbersee help\nData Release accession Number. Will be filled automatically during submission process. Provide ONLY if the project has already been submitted to EBI.\nStudy name abbreviation\nOptional abbreviation which is used when space is limited, such as on barcode labels\nAlignments in BAM\nIf you uncheck this, then you will not have alignments added to your BAM files for any runs created in this study. Also, please be aware, that unless you choose a reference genome, the reference that the alignments will be made against is gue

Edit a study when data release strategy is Not Applicable does not error when setting strategy to Open Failure/Error: expect(page).to have_content('Your study has been updated') expected to find text "Your study has been updated" in "Test\nStudies\nProjects\nAdmin\nUAT\nPipelines\nBatches\nLabwhere Reception\nLab View\nLab search\nReport Fails\nBarcode\nProject\nStudy\nSample\nLabware\nAssetGroup\nRequest\nSupplier\nSubmission\nAll\nStudy: Never Edit\nEdit your study. Required fields are marked with .\nStudy owner name\nSelect an owner...\nProperties\nFaculty Sponsor\nFaculty Sponsor 1\nProgram\nGeneral\nNumber of gigabases per sample (minimum 0.15)\nPrelim ID\nPrelim ID\nReference genome\nReferenceGenome1\nStudy Type\nNot specified\nTitleENA requirement\nTitle of the study as would be used in a publication.\nStudy descriptionENA requirement\nSome study on something\nAbstractENA requirement\nBriefly describes the goals, purpose, and scope of the Study. This need not be listed if it can be inherited from a referenced publication. For managed access studies, please bear in mind it’s this text in the Abstract section that will be publicly visible on the EGA website.\nStudy Visibility\nStudy VisibilityENA requirement\nHold\nPublic\nMake this ENA project public immediately.\nEBI Library StrategyENA requirement\nRNA-Seq\nChIP-Seq\nWGS\nWXS\nAMPLICON\nCLONE\nPOOLCLONE\nCLONEEND\nBisulfite-Seq\nMNase-Seq\nDNase-Hypersensitivity\nFAIRE-seq\nSELEX\nRIP-Seq\nChIA-PET\nOTHER\nEBI Library SourceENA requirement\nGENOMIC\nTRANSCRIPTOMIC\nMETAGENOMIC\nMETATRANSCRIPTOMIC\nSYNTHETIC\nVIRAL RNA\nOTHER\nEBI Library SelectionENA requirement\nRANDOM\nPCR\nRANDOM PCR\nRT-PCR\nHMPR\nMF\nCF-S\nCF-M\nCF-T\nMDA\nMSLL\ncDNA\nChIP\nMNase\nDNAse\nHybrid Selection\nReduced Representation\nRestriction Digest\n5-methylcytidine antibody\nMBD2 protein methyl-CpG binding domain\nDo any of the samples in this study contain human DNA?\nDo any of the samples in this study contain human DNA?\nYes\nNo\nIf they do, you will be required to upload the relevant documents. This does not apply to samples that are going to have the Human DNA removed prior to analysis.\nDoes this study contain samples that are contaminated with human DNA which must be removed prior to analysis?\nDoes this study contain samples that are contaminated with human DNA which must be removed prior to analysis?\nYes\nNo\nUsually only applicable to pathogen research when human DNA will not be sequenced and therefore does not require ethical approval.\nAre all the samples to be used in this study commercially available, unlinked anonymised cell-lines?\nAre all the samples to be used in this study commercially available, unlinked anonymised cell-lines?\nYes\nNo\nAre all the samples to be used in this study commercially available, anonymised cell-lines or DNA/RNA from commercially available, anonymised cell-lines?\nDoes this study require the removal of X chromosome and autosome sequence?\nDoes this study require the removal of X chromosome and autosome sequence?\nYes\nNo\nApplicable for studies where only mtDNA and Y-chromosomal data will be submitted to EGA.\nDoes this study require y chromosome data to be separated from x and autosomal data before archival?\nApplicable for studies where Y-chromosome data will not be submitted to the EGA, or will be submitted separately from autosomal sequence.\nENA Project IDENA (see help)\nThe required PROJECT_ID accession is generated by the Genome Project database at NCBI and will be valid also at the other archival institutions. Enter 0 if the project id is unknown or not assigned.\nENA Study Accession Numbersee help\nData Release accession Number. Will be filled automatically during submission process. Provide ONLY if the project has already been submitted to EBI.\nStudy name abbreviation\nOptional abbreviation which is used when space is limited, such as on barcode labels\nAlignments in BAM\nIf you uncheck this, then you will not have alignments added to your BAM files for any runs created in this study. Also, please be aware, that unless you choose a

Manage users assign a study role Failure/Error: expect(page).to have_content 'Manager' expected to find text "Manager" in "Role Type Name Action"

The job was canceled because "_3_1" failed.

Asset submission Validation of Flowcell Type field for request types that do not require a Flowcell Type creates a new request successfully even when Flowcell Type is not specified Failure/Error: super Capybara::Ambiguous: Ambiguous match, found 2 elements matching visible field "Fragment size required (from)" that is not disabled

Asset submission Validation of Flowcell Type field for request types that require a Flowcell Type creates a new request successfully when Flowcell Type is correctly set Failure/Error: super Capybara::Ambiguous: Ambiguous match, found 2 elements matching visible field "Fragment size required (from)" that is not disabled

Asset submission Validation of Flowcell Type field for request types that require a Flowcell Type displays an error if Flowcell Type is not set Failure/Error: super Capybara::Ambiguous: Ambiguous match, found 2 elements matching visible field "Fragment size required (from)" that is not disabled

Asset submission when study does not have an accession number behaves like it shows an error message about study has error message Failure/Error: super Capybara::Ambiguous: Ambiguous match, found 2 elements matching visible field "Fragment size required (from)" that is not disabled Shared Example Group: "it shows an error message about study" called from ./spec/features/assets/asset_submission_spec.rb:268

Asset submission when an admin with the original request_type behaves like it allows additional sequencing request additional sequencing Failure/Error: super Capybara::Ambiguous: Ambiguous match, found 2 elements matching visible field "Fragment size required (from)" that is not disabled Shared Example Group: "it allows additional sequencing" called from ./spec/features/assets/asset_submission_spec.rb:233

Asset submission when an admin with a new request_type behaves like it allows additional sequencing request additional sequencing Failure/Error: super Capybara::Ambiguous: Ambiguous match, found 2 elements matching visible field "Fragment size required (from)" that is not disabled Shared Example Group: "it allows additional sequencing" called from ./spec/features/assets/asset_submission_spec.rb:239

Asset submission when an admin when cross study pooled behaves like it allows cross study sequencing request additional sequencing with override study Failure/Error: super Capybara::Ambiguous: Ambiguous match, found 2 elements matching visible field "Fragment size required (from)" that is not disabled Shared Example Group: "it allows cross study sequencing" called from ./spec/features/assets/asset_submission_spec.rb:251

Asset submission when an admin when cross study pooled behaves like it allows cross study sequencing request additional sequencing without study Failure/Error: super Capybara::Ambiguous: Ambiguous match, found 2 elements matching visible field "Fragment size required (from)" that is not disabled Shared Example Group: "it allows cross study sequencing" called from ./spec/features/assets/asset_submission_spec.rb:251

Cherrypicking pipeline where there is a control plate and a single destination when the number of plates exceeds number of beds (Several runs) behaves like a cherrypicking procedure running the cherrypicking pipeline Failure/Error: plates_with_samples = plates.reject { |_pid, rows| rows.values.map(&:values).flatten.all?(&:empty?) } NoMethodError: undefined method `reject' for nil Shared Example Group: "a cherrypicking procedure" called from ./spec/features/pipelines/cherrypick/cherrypick_pipeline_spec.rb:403

Cherrypicking pipeline where there is a control plate and a single destination behaves like a cherrypicking procedure running the cherrypicking pipeline Failure/Error: plates_with_samples = plates.reject { |_pid, rows| rows.values.map(&:values).flatten.all?(&:empty?) } NoMethodError: undefined method `reject' for nil Shared Example Group: "a cherrypicking procedure" called from ./spec/features/pipelines/cherrypick/cherrypick_pipeline_spec.rb:384

The job was canceled because "_3_1" failed.

cherrypick for fluidigm pipeline - micro litre required volume is 13 Failure/Error: find_all(:checkbox).each { |checkbox| expect(checkbox).to be_checked } expected `#<Capybara::Node::Element tag="input" path="/HTML/BODY[1]/DIV[1]/SECTION[1]/SECTION[1]/DIV[1]/FORM[1]/DIV[2]/DIV[2]/DIV[1]/TABLE[1]/TBODY[1]/TR[1]/TD[1]/INPUT[2]">.checked?` to be truthy, got false