4409 y24 379 study setup fields to align to the ena database fields improvement #9564
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Run rspec tests:
spec/features/studies/create_study_spec.rb#L72
Create a study create open study
Failure/Error: expect(page).to have_content('Your study has been created')
expected to find text "Your study has been created" in "Test\nStudies\nProjects\nAdmin\nUAT\nPipelines\nBatches\nLabwhere Reception\nLab View\nLab search\nReport Fails\nBarcode\nProject\nStudy\nSample\nLabware\nAssetGroup\nRequest\nSupplier\nSubmission\nAll\nProblems creating your new study\nStudy Create\nTo register a new study, complete the form below. Required fields are marked with .\nYour study has not been created.\nStudy metadata ebi library strategy can't be blank\nStudy metadata ebi library source can't be blank\nStudy metadata ebi library selection can't be blank\nStudy name\nStudy owner name\nSelect an owner...\nSelect an owner...\nProperties\nFaculty Sponsor\nJack Sponsor\nJack Sponsor\nProgram\nProgram1\nProgram1\nNumber of gigabases per sample (minimum 0.15)\nPrelim ID\nPrelim ID\nReference genome\nStudy Type\nStudy Type 1\nStudy Type 1\nTitleENA requirement\nTitle of the study as would be used in a publication.\nStudy descriptionENA requirement\nwriting cukes\nAbstractENA requirement\nBriefly describes the goals, purpose, and scope of the Study. This need not be listed if it can be inherited from a referenced publication. For managed access studies, please bear in mind it’s this text in the Abstract section that will be publicly visible on the EGA website.\nStudy Visibility\nStudy VisibilityENA requirement\nHold\nPublic\nMake this ENA project public immediately.\nEBI Library Strategy\nENA requirement\nPlease select...\nRNA-Seq\nChIP-Seq\nWGS\nWXS\nAMPLICON\nCLONE\nPOOLCLONE\nCLONEEND\nBisulfite-Seq\nMNase-Seq\nDNase-Hypersensitivity\nFAIRE-seq\nSELEX\nRIP-Seq\nChIA-PET\nOTHER\nPlease select...\nEBI Library Source\nENA requirement\nPlease select...\nGENOMIC\nTRANSCRIPTOMIC\nMETAGENOMIC\nMETATRANSCRIPTOMIC\nSYNTHETIC\nVIRAL RNA\nOTHER\nPlease select...\nEBI Library Selection\nENA requirement\nPlease select...\nRANDOM\nPCR\nRANDOM PCR\nRT-PCR\nHMPR\nMF\nCF-S\nCF-M\nCF-T\nMDA\nMSLL\ncDNA\nChIP\nMNase\nDNAse\nHybrid Selection\nReduced Representation\nRestriction Digest\n5-methylcytidine antibody\nMBD2 protein methyl-CpG binding domain\nPlease select...\nDo any of the samples in this study contain human DNA?\nDo any of the samples in this study contain human DNA?\nYes\nNo\nIf they do, you will be required to upload the relevant documents. This does not apply to samples that are going to have the Human DNA removed prior to analysis.\nDoes this study contain samples that are contaminated with human DNA which must be removed prior to analysis?\nDoes this study contain samples that are contaminated with human DNA which must be removed prior to analysis?\nYes\nNo\nUsually only applicable to pathogen research when human DNA will not be sequenced and therefore does not require ethical approval.\nAre all the samples to be used in this study commercially available, unlinked anonymised cell-lines?\nAre all the samples to be used in this study commercially available, unlinked anonymised cell-lines?\nYes\nNo\nAre all the samples to be used in this study commercially available, anonymised cell-lines or DNA/RNA from commercially available, anonymised cell-lines?\nDoes this study require the removal of X chromosome and autosome sequence?\nDoes this study require the removal of X chromosome and autosome sequence?\nYes\nNo\nApplicable for studies where only mtDNA and Y-chromosomal data will be submitted to EGA.\nDoes this study require y chromosome data to be separated from x and autosomal data before archival?\nApplicable for studies where Y-chromosome data will not be submitted to the EGA, or will be submitted separately from autosomal sequence.\nENA Project IDENA (see help)\nThe required PROJECT_ID accession is generated by the Genome Project database at NCBI and will be valid also at the other archival institutions. Enter 0 if the project id is unknown or not assigned.\nENA Study Accession Numbersee help\nData Release accession Number. Will be filled automatically during submission process. Provide ONLY if the proje
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