Removed reusing config entries to see whether it fixes cucumber failures #9584
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11 errors
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Run Cucumber tests:
features/sample_manifest/sample_manifest.feature#L31
Create a tube manifest and print just the first barcode when selecting option Only First Label failed: Unable to find option "Standard sample" within #<Capybara::Node::Element tag="select" path="/html/body/div/section/section/div/form/fieldset[1]/ol/li[2]/select">
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Run Cucumber tests:
features/sample_manifest/sample_manifest.feature#L46
Create a tube manifest and print all the barcodes failed: Unable to find option "Standard sample" within #<Capybara::Node::Element tag="select" path="/html/body/div/section/section/div/form/fieldset[1]/ol/li[2]/select">
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Run Cucumber tests:
features/sample_manifest/sample_manifest.feature#L93
Upload a manifest that has mismatched welle failed: expected to find text "Sample cannot be moved between wells" in "Cucumber\nStudies Projects Admin UAT Pipelines Batches Labwhere Reception Lab View Lab search Report Fails\nBarcode Project Study Sample Labware AssetGroup Request Supplier Submission All\nJohn Doe Edit profile\nLogout\nYour sample manifest couldn't be uploaded.\nSample Manifests New and upload\nSample manifest can't be blank\n[\"Row 10 - Cannot find sample manifest for Sanger ID: sample_1\"]\n[\"Row 11 - Cannot find sample manifest for Sanger ID: sample_2\"]\n[\"Row 12 - Cannot find sample manifest for Sanger ID: sample_3\"]\n[\"Row 13 - Cannot find sample manifest for Sanger ID: sample_4\"]\n[\"Row 14 - Cannot find sample manifest for Sanger ID: sample_5\"]\n[\"Row 15 - Cannot find sample manifest for Sanger ID: sample_6\"]\n[\"Row 17 - Cannot find sample manifest for Sanger ID: sample_8\"]\n[\"Row 18 - Cannot find sample manifest for Sanger ID: sample_9\"]\n[\"Row 19 - Cannot find sample manifest for Sanger ID: sample_10\"]\n[\"Row 20 - Cannot find sample manifest for Sanger ID: sample_11\"]\n[\"Row 21 - Cannot find sample manifest for Sanger ID: sample_12\"]\nSample manifest Does not exist. Double check that Sanger sample ids have not been changed.\nThis sample manifest upload screen handles tubes with tag sequences, and plates or tubes with foreign barcodes.\n Override previously uploaded samples\nName Contains Study Supplier Created Updated Created by Manifest Upload Errors State Manifest_4 1 plate Test study Test supplier name 2025-02-12 2025-02-12 john Blank manifest Upload manifest No manifest uploaded\nHelp\nSampleDB Home Create manifest for plates Create manifest for library plates Create manifest for tubes Create manifest for library tubes Create manifest for tube racks Create manifest for multiplexed libraries View all manifests Create supplier View all suppliers Create Study Create Project\nWellcome Sanger Institute A tool from LIMS and Informatics\nSequencescape 0.0.0 [cucumber] y24-285-filter-single-vs-dual-index-adapter-types@289984b LOCAL fv-az1719-492"
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Run Cucumber tests:
features/sample_manifest/sample_manifest.feature#L102
Upload a manifest that has mismatched plates failed: expected to find text "Sanger plate barcode has been modified, but it is not a valid foreign barcode format" in "Cucumber\nStudies Projects Admin UAT Pipelines Batches Labwhere Reception Lab View Lab search Report Fails\nBarcode Project Study Sample Labware AssetGroup Request Supplier Submission All\nJohn Doe Edit profile\nLogout\nYour sample manifest couldn't be uploaded.\nSample Manifests New and upload\nSample manifest can't be blank\n[\"Row 10 - Cannot find sample manifest for Sanger ID: sample_1\"]\n[\"Row 11 - Cannot find sample manifest for Sanger ID: sample_2\"]\n[\"Row 12 - Cannot find sample manifest for Sanger ID: sample_3\"]\n[\"Row 13 - Cannot find sample manifest for Sanger ID: sample_4\"]\n[\"Row 14 - Cannot find sample manifest for Sanger ID: sample_5\"]\n[\"Row 15 - Cannot find sample manifest for Sanger ID: sample_6\"]\n[\"Row 17 - Cannot find sample manifest for Sanger ID: sample_8\"]\n[\"Row 18 - Cannot find sample manifest for Sanger ID: sample_9\"]\n[\"Row 19 - Cannot find sample manifest for Sanger ID: sample_10\"]\n[\"Row 20 - Cannot find sample manifest for Sanger ID: sample_11\"]\n[\"Row 21 - Cannot find sample manifest for Sanger ID: sample_12\"]\nSample manifest Does not exist. Double check that Sanger sample ids have not been changed.\nThis sample manifest upload screen handles tubes with tag sequences, and plates or tubes with foreign barcodes.\n Override previously uploaded samples\nName Contains Study Supplier Created Updated Created by Manifest Upload Errors State Manifest_5 1 plate Test study Test supplier name 2025-02-12 2025-02-12 john Blank manifest Upload manifest No manifest uploaded\nHelp\nSampleDB Home Create manifest for plates Create manifest for library plates Create manifest for tubes Create manifest for library tubes Create manifest for tube racks Create manifest for multiplexed libraries View all manifests Create supplier View all suppliers Create Study Create Project\nWellcome Sanger Institute A tool from LIMS and Informatics\nSequencescape 0.0.0 [cucumber] y24-285-filter-single-vs-dual-index-adapter-types@289984b LOCAL fv-az1719-492"
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Run Cucumber tests:
features/sample_manifest/sample_manifest.feature#L111
Upload a csv manifest with empty samples failed: Tables were not identical:
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features/sample_manifest/sample_manifest.feature#L250
Upload a manifest with invalid cell line failed: expected to find text "DNA source is not included in the list" in "Cucumber\nStudies Projects Admin UAT Pipelines Batches Labwhere Reception Lab View Lab search Report Fails\nBarcode Project Study Sample Labware AssetGroup Request Supplier Submission All\nJohn Doe Edit profile\nLogout\nYour sample manifest couldn't be uploaded.\nSample Manifests New and upload\nSample manifest can't be blank\n[\"Row 10 - Cannot find sample manifest for Sanger ID: sample_1\"]\n[\"Row 11 - Cannot find sample manifest for Sanger ID: sample_2\"]\n[\"Row 12 - Cannot find sample manifest for Sanger ID: sample_3\"]\n[\"Row 13 - Cannot find sample manifest for Sanger ID: sample_4\"]\n[\"Row 14 - Cannot find sample manifest for Sanger ID: sample_5\"]\n[\"Row 15 - Cannot find sample manifest for Sanger ID: sample_6\"]\n[\"Row 16 - Cannot find sample manifest for Sanger ID: sample_7\"]\nSample manifest Does not exist. Double check that Sanger sample ids have not been changed.\nThis sample manifest upload screen handles tubes with tag sequences, and plates or tubes with foreign barcodes.\n Override previously uploaded samples\nName Contains Study Supplier Created Updated Created by Manifest Upload Errors State Manifest_7 1 plate Test study Test supplier name 2025-02-12 2025-02-12 john Blank manifest Upload manifest No manifest uploaded\nHelp\nSampleDB Home Create manifest for plates Create manifest for library plates Create manifest for tubes Create manifest for library tubes Create manifest for tube racks Create manifest for multiplexed libraries View all manifests Create supplier View all suppliers Create Study Create Project\nWellcome Sanger Institute A tool from LIMS and Informatics\nSequencescape 0.0.0 [cucumber] y24-285-filter-single-vs-dual-index-adapter-types@289984b LOCAL fv-az1719-492"
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Run Cucumber tests:
features/sample_manifest/sample_manifest.feature#L257
Upload a manifest with invalid cell line failed: Tables were not identical:
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Run Cucumber tests:
features/sample_manifest/sample_manifest.feature#L273
Upload some empty samples, reupload with samples but without override set failed: Tables were not identical:
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Run Cucumber tests:
features/sample_manifest/sample_manifest.feature#L317
Upload some empty samples, reupload with samples but with override set failed: Tables were not identical:
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features/sample_manifest/sample_manifest.feature#L390
Updating of sample accession numbers failed: Tables were not identical:
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