dockerized the application and fixed bugs

.dockerignore

@@ -0,0 +1,3 @@
+medmini.pdf
+README.md 
+media/

.gitignore

@@ -0,0 +1,2 @@
+med_db/
+

App/TextInputComponent.js

@@ -17,7 +17,8 @@ const TextInputComponent = () => {
   const handleTextSubmit = async () => {
     try {
       console.log(myRAM, text);
-      const url = "http://10.2.133.59:5000/query";
+      const url = "http://"+String(process.env.EXPO_PUBLIC_HOSTIP)+":5000/query";
+      console.log(url)
       const headers = {
         'Content-Type': 'application/json',
       };

App/package.json

@@ -16,6 +16,7 @@
     "expo-status-bar": "~1.6.0",
     "react": "18.2.0",
     "react-native": "0.72.6",
+    "react-native-animated-ellipsis": "^2.0.0",
     "react-native-device-info": "^10.11.0"
   },
   "devDependencies": {

Dockerfile

@@ -1,16 +1,36 @@
-FROM alpine:3.14
+FROM node:18-bookworm-slim
 
-RUN sudo apt install conda
-RUN conda env create -f ./build_utils/env.yml
+# ARG REACT_NATIVE_PACKAGER_HOSTNAME
 
-COPY ./App
-COPY ./backend.py
-COPY ./dbGen.py
-COPY ./medmini.py
-COPY ./mashqa_data
-COPY ./build_utils/run.sh
+WORKDIR /medmini
+COPY . .
 
-RUN conda activate medmini
 
-RUN chmod +x run.sh
-RUN run.sh
+
+RUN mv build_utils/services.sh services.sh \
+    && chmod +x services.sh \
+    && apt-get update \
+    # && apt install curl -y \
+    && cd App && npm ci && cd .. \
+    && apt-get update \
+    && apt-get install python3 python3-pip -y \
+    && rm -rf /usr/lib/python3.11/EXTERNALLY-MANAGED \
+    && pip3 install torch==2.1.0 --index-url https://download.pytorch.org/whl/cpu \
+    && pip3 install transformers==4.34.1 langchain==0.0.324 Flask==3.0.0 flask-cors==4.0.0 chromadb==0.4.15 sentence-transformers==2.2.2 sentencepiece==0.1.99 
+
+# SHELL ["/bin/bash", "--login", "-i", "-c"]
+# SHELL ["/bin/bash", "--login", "-c"]
+
+
+
+
+# EXPOSE 19000 19001 19002
+EXPOSE 8081 5000
+
+
+CMD ./services.sh
+
+
+
+# todo
+# use a smaller base image

backend.py

@@ -1,10 +1,11 @@
 from flask import Flask, request;
 from flask_cors import CORS, cross_origin
-# from pegasus import pegasus;\
-from medmini import infer
+from medmini import infer,systemInit
 
 app = Flask(__name__)
 CORS(app)
+summarizer=None
+vectordb=None
 
 @app.route('/', methods=['GET', 'POST'])
 @cross_origin(supports_credentials=True)
@@ -18,7 +19,10 @@ def root():
 def x():
   # print(request.get_json(force=True)["question"])
     # return request.get_json(force=True)["text"]
-  return infer(request.get_json(force=True)["question"])
+  global summarizer
+  global vectordb
+  return infer(request.get_json(force=True)["question"],summarizer,vectordb)
 
 if __name__ == '__main__':
-  app.run(host='192.168.196.219', port=5000, debug=True)
+  summarizer,vectordb=systemInit()
+  app.run(host="0.0.0.0",port=5000,debug=True)

build_utils/requirements.txt

@@ -0,0 +1,8 @@
+transformers 
+langchain 
+Flask 
+flask-cors 
+chromadb 
+sentence-transformers 
+sentencepiece
+torch --index-url https://download.pytorch.org/whl/cpu

build_utils/services.sh

@@ -0,0 +1,12 @@
+#!/bin/bash
+
+
+
+
+python3 backend.py &
+cd App/ ; echo EXPO_PUBLIC_HOSTIP=$REACT_NATIVE_PACKAGER_HOSTNAME > .env 
+npx expo start &
+
+wait -n
+
+exit $?

install.sh

@@ -0,0 +1,28 @@
+#!/bin/bash
+
+# updating repositories and installing curl
+apt update
+apt install curl -y
+
+# installing node and npm
+curl -o- https://raw.githubusercontent.com/nvm-sh/nvm/v0.39.5/install.sh | bash
+source ~/.bashrc
+nvm install v18.13.0
+
+
+# installing all node modules required
+cd App
+npm ci
+cd ..
+
+
+# setting up python deps
+apt update
+apt install python3.10 python3-pip -y
+pip3 install torch --index-url https://download.pytorch.org/whl/cpu
+pip3 install transformers langchain Flask flask-cors chromadb sentence-transformers sentencepiece
+
+
+#todo
+# pull the med_db
+