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| # Files that will not show up in git status listings | ||
| # | ||
| *.[oa] | ||
| *~ | ||
| # For Joe editor lovers | ||
| DEADJOE | ||
| # For SM users | ||
| .smhist | ||
| # staging subdirectory | ||
| /staging | ||
| # Other stuff | ||
| workspace/* | ||
| # CMake build system directories/files | ||
| /Makefile | ||
| /optimized | ||
| /debug | ||
| /build | ||
| /.cpackignore | ||
| /.version | ||
| /.version.fn | ||
| /Debug | ||
| /Release |
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| Original file line number | Diff line number | Diff line change |
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| galstar | ||
| ======= | ||
|
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| Setup and Build | ||
| =============== | ||
|
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| ./configure --with-libpeyton=../libpeyton/optimized --optimized --prefix=`pwd`/staging | ||
| make -j install | ||
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| This will configure and build an optimized version of galstar in | ||
| ./optimized and install it in directory ./staging linking against | ||
| an optimized version of libpeyton from ../libpeyton/optimized | ||
|
|
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| #!/bin/bash | ||
| # | ||
| # A configure stub for people used to that syntax | ||
| # Do ./configure --help for usage instructions | ||
| # | ||
|
|
||
| usage() | ||
| { | ||
| tee -a $CONFIGLOG <<-EOF | ||
| Configure and prepare the source code for building. | ||
| Usage: | ||
| $0 [flags] [CMAKE_VAR1=VALUE [CMAKE_VAR2=VALUE2 [...]]] | ||
| Available flags: | ||
| --prefix=<prefix> # will install the code into <prefix> | ||
| --optimized # configure the 'Release' build | ||
| --debug # configure the 'Debug' build | ||
| --env=<VAR=VALUE> # set VAR=VALUE environment variable | ||
| # before running CMAKE | ||
| --with-gcc=<gcc_root> # use gcc from <gcc_root> directory | ||
| --with-cuda=<cuda_root> # use CUDA toolkit from <cuda_root> | ||
| --with-boost=<boost_root> # use boost from <boost_root> directory | ||
| --with-libpeyton=<lp_root> # use libpeyton from <lp_root> directory | ||
| --devemu # target CUDA code for device emulation | ||
| If ran from the top level source directory, it will configure the build | ||
| directory in build/optimized/debug (depending on whether --optimized or | ||
| --debug flags were present), as well as generate a simple Makefile to | ||
| allowing the user to build the code directly from the top-level directory. | ||
| Otherwise, it will configure the source in the current directory (assuming | ||
| it's meant to be the build directory). | ||
| This build system uses CMake. If your CMake executable is in | ||
| nonstandard location, you may specify it via the CMAKE environment | ||
| variable. | ||
| Written by Mario Juric <[email protected]> | ||
| EOF | ||
| } | ||
|
|
||
| xecho() | ||
| { | ||
| echo "== $@" | tee -a $CONFIGLOG | ||
| } | ||
|
|
||
| oecho() | ||
| { | ||
| echo "** $@" >> $CONFIGLOG | ||
| } | ||
|
|
||
| configlog() | ||
| { | ||
| CONFIGLOG_FINAL="$CONFIGLOG" | ||
| CONFIGLOG="$CONFIGLOG.tmp" | ||
| cat > $CONFIGLOG <<-EOF | ||
| This file contains any messages produced by CMake while | ||
| running configure, to aid debugging if configure makes a mistake. | ||
| It was created by configure, an Autoconf-like script for CMake | ||
| written by Mario Juric <[email protected]>. Invocation command line | ||
| was: | ||
| \$ $0 $@ | ||
| ## --------- ## | ||
| ## Platform. ## | ||
| ## --------- ## | ||
| hostname = `(hostname || uname -n) 2>/dev/null | sed 1q` | ||
| uname -m = `(uname -m) 2>/dev/null || echo unknown` | ||
| uname -r = `(uname -r) 2>/dev/null || echo unknown` | ||
| uname -s = `(uname -s) 2>/dev/null || echo unknown` | ||
| uname -v = `(uname -v) 2>/dev/null || echo unknown` | ||
| CMAKE = $CMAKE | ||
| which \$CMAKE = `(which "$CMAKE") 2>/dev/null || echo not found` | ||
| \$CMAKE --version = `("$CMAKE" --version) 2>/dev/null || echo not found` | ||
| ## ------------------ ## | ||
| ## Configuration log. ## | ||
| ## ------------------ ## | ||
| EOF | ||
| # If CONFIGLOG_FINAL is defined, move $CONFIGLOG to $CONFIGLOG_FINAL (and delete $CONFIGLOG) | ||
| # In case you're wondering, CONFIGLOG_FINAL becomes undefined if --help was given on the command line | ||
| trap "{ test \"x\$CONFIGLOG_FINAL\" != x && mv '$CONFIGLOG' '$CONFIGLOG_FINAL'; rm -f '$CONFIGLOG'; }" EXIT | ||
| } | ||
|
|
||
| # Defaults | ||
| CMAKE=${CMAKE:-cmake} | ||
| ENV=${env} | ||
|
|
||
| # Store invocation information | ||
| CONFIGLOG="`pwd`/config.log" | ||
| configlog "$@" | ||
|
|
||
| # Quick check for CMake | ||
| which $CMAKE 2>&1 > /dev/null || { | ||
| CML=`dirname $0`"/CMakeLists.txt" | ||
| xecho "No usable CMake found (tried looking for executable \`$CMAKE')" | ||
| test -f "$CML" && { | ||
| CMV=`grep -i cmake_minimum_required "$CML" | perl -e '$_=<>; ($v) = /^cmake_minimum_required\s*\(\s*version\s+([0-9.]+)\s*\)/i; print $v'`; | ||
| test "x$CMV" != "x" && xecho "CMake $CMV or greater is needed to build this code."; | ||
| } || { | ||
| xecho "CMake is needed to build this code."; | ||
| } | ||
| xecho "If your CMake executable is in nonstandard location, you may specify" | ||
| xecho "it via the CMAKE environment variable." | ||
| exit -1; | ||
| } | ||
|
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| BUILDDIR='build' | ||
|
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||
| # | ||
| # Project-specific command-line argument parsing | ||
| # | ||
| TEMP=`getopt -o hp: -l help,prefix:,debug,optimized,devemu,env:,with-gcc:,with-cuda:,with-boost:,with-libpeyton: -- "$@"` || { xecho "Try $0 --help"; exit $?; } | ||
| eval set -- "$TEMP" | ||
| while true ; do | ||
| case "$1" in | ||
| -p|--prefix) | ||
| xecho "Setting install path to '$2'" | ||
| CMAKE="$CMAKE -DCMAKE_INSTALL_PREFIX='$2'" | ||
| shift 2 ;; | ||
| --env) | ||
| xecho "Setting environment variable '$2'" | ||
| ENV="$ENV '$2'" | ||
| shift 2 ;; | ||
| --devemu) | ||
| xecho "Targeting CUDA code for device emulation" | ||
| CMAKE="$CMAKE -DCUDA_BUILD_EMULATION=ON" | ||
| shift 1 ;; | ||
| --debug) | ||
| xecho "Setting build type to 'Debug'" | ||
| BUILDDIR='debug' | ||
| CMAKE="$CMAKE -DCMAKE_BUILD_TYPE='Debug'" | ||
| shift 1 ;; | ||
| --optimized) | ||
| xecho "Setting build type to 'Release'" | ||
| BUILDDIR='optimized' | ||
| CMAKE="$CMAKE -DCMAKE_BUILD_TYPE='Release'" | ||
| shift 1 ;; | ||
| --with-boost) | ||
| xecho "Using Boost from '$2'" | ||
| CMAKE="$CMAKE -DBOOST_ROOT='$2'" | ||
| shift 2 ;; | ||
| --with-cuda) | ||
| xecho "Using CUDA Toolkit from '$2'" | ||
| CMAKE="$CMAKE -DCUDA_TOOLKIT_ROOT_DIR='$2'" | ||
| shift 2 ;; | ||
| --with-gcc) | ||
| xecho "Using gcc suite from '$2'" | ||
| CMAKE="$CMAKE -DCMAKE_CXX_COMPILER='$2/bin/g++'" | ||
| CMAKE="$CMAKE -DCMAKE_C_COMPILER='$2/bin/gcc'" | ||
| CMAKE="$CMAKE -DGCC_ROOT='$2'" | ||
| ENV="$ENV LDFLAGS='-L$2/lib -L$2/lib64'" | ||
| shift 2 ;; | ||
| --with-libpeyton) | ||
| xecho "Using libpeyton from '$2'" | ||
| CMAKE="$CMAKE -Dlibpeyton_ROOT='$2'" | ||
| shift 2 ;; | ||
| -h|--help) | ||
| usage; | ||
| CONFIGLOG_FINAL= | ||
| exit 0 ;; | ||
| --) shift ; break ;; | ||
| *) xecho "Internal error!" ; exit 1 ;; | ||
| esac | ||
| done | ||
|
|
||
| # Figure out the build dir -- if we're in the same directory as the | ||
| # configure script, make a subdirectory based on the choice of BUILD_TYPE | ||
| test -x ./configure && { | ||
| mkdir -p "$BUILDDIR" && cd "$BUILDDIR" && SOURCEDIR=".." || { | ||
| xecho "Error creating build directory."; exit -1; | ||
| } | ||
|
|
||
| # A flag meaning we're configuring from in-source | ||
| BDSET=1 | ||
|
|
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| xecho "Build directory is '$BUILDDIR'" | ||
| } || { | ||
| BUILDDIR="." | ||
| SOURCEDIR=`dirname $0` | ||
| } | ||
|
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| # Assume all extra arguments are CMAKE variable definitions | ||
| for arg do | ||
| CMAKE="$CMAKE '-D$arg'" | ||
| done | ||
| CMAKE="$CMAKE $SOURCEDIR" | ||
|
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| # Delete old CMakeCache.txt if it exists | ||
| test -f CMakeCache.txt && rm -f CMakeCache.txt | ||
|
|
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| # Run cmake | ||
| xecho "Invoking CMake to configure the source" | ||
| oecho "$ENV $CMAKE" | ||
| eval $ENV $CMAKE | tee -a $CONFIGLOG; | ||
| test "x${PIPESTATUS[0]}" == "x0" && { | ||
| if [ "$BDSET" == "1" ]; then | ||
| # Generate a stub makefile that will hand-off compilation to the real makefile | ||
| # This happens only when configure is run in-source | ||
| cat > ../Makefile <<EOT | ||
| all: | ||
| tidy: | ||
| @ rm -rf $BUILDDIR | ||
| %: | ||
| @ test -f $BUILDDIR/Makefile || { echo "$BUILDDIR directory not configured. Run configure first." && false; } | ||
| @ cd $BUILDDIR && \$(MAKE) \$@ | ||
| EOT | ||
| fi; | ||
| xecho "Source configured in directory '$BUILDDIR'. Run \`make' to compile." | ||
| } || { | ||
| xecho "Error configuring source." | ||
| } |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,5 @@ | ||
| #!/bin/bash | ||
|
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| ../scripts/plotpdf.py prob_ArMr.txt A_r M_r prob_ArMr.png | ||
| ../scripts/plotpdf.py prob_MrFeH.txt M_r "[Fe/H]" prob_MrFeH.png | ||
| ../scripts/plotpdf.py prob_DMAr.txt DM "A_r" prob_DMAr.png |
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