Skip to content

NF: Autoencoder FINTA ConvNext#246

Open
AntoineTheb wants to merge 16 commits intoscil-vital:masterfrom
AntoineTheb:add_autoencoder_streamlines
Open

NF: Autoencoder FINTA ConvNext#246
AntoineTheb wants to merge 16 commits intoscil-vital:masterfrom
AntoineTheb:add_autoencoder_streamlines

Conversation

@AntoineTheb
Copy link
Copy Markdown
Collaborator

@AntoineTheb AntoineTheb commented Oct 1, 2024

Description

Add a new autoencoder model inspired by ConvNext: https://arxiv.org/abs/2201.03545

Testing data and script

Ask Arnaud for data

Have you

  • Added a description of the content of this PR above
  • Followed proper commit message formatting
  • Added data and a script to test this PR
  • Made sure that PEP8 issues are resolved
  • Tested the code yourself right before pushing
  • Added unit tests to test the code you implemented

People this PR concerns

@pep8speaks
Copy link
Copy Markdown

pep8speaks commented Oct 1, 2024

Hello @AntoineTheb, Thank you for updating !

There are currently no PEP 8 issues detected in this Pull Request. Cheers! 🍻

Comment last updated at 2024-10-03 21:03:57 UTC

@AntoineTheb AntoineTheb changed the title [WIP] Autoencoder FINTA ConvNext NF: Autoencoder FINTA ConvNext Oct 3, 2024
Copy link
Copy Markdown
Collaborator

@levje levje left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

lgtm !

Comment thread scripts_python/ae_autoencode_streamlines.py Outdated
Comment thread scripts_python/ae_autoencode_streamlines.py Outdated
Copy link
Copy Markdown
Collaborator

@arnaudbore arnaudbore left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

LGTM - Either we wait for latent space viz before merging or Jeremi or I could add it after merging.

@@ -0,0 +1,136 @@
#!/usr/bin/env python
# -*- coding: utf-8 -*-
Copy link
Copy Markdown
Collaborator

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Rename to ae_autoencode_tractogram.py

"as a data per point (color)")

# Additional arg for projects
p.add_argument('--model', type=str, choices=['finta', 'convnext'],
Copy link
Copy Markdown
Collaborator

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Put it as a mandatory argument.

@AntoineTheb
Copy link
Copy Markdown
Collaborator Author

@arnaudbore don't wait for me I'll be busy with MICCAI then vacations so I'll rebase and adjust once @levje's pr is merged

@stale
Copy link
Copy Markdown

stale Bot commented Apr 26, 2025

This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs, but you will still be able to re-open it. Thank you for your contributions.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

4 participants