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svca4_createSVCAGui.m

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+function varargout = svca4_createSVCAGui(varargin)
+% svca4_createSVCAGui MATLAB code for svca4_createSVCAGui.fig
+
+% Edit the above text to modify the response to help svca4_createSVCAGui
+
+% Last Modified by GUIDE v2.5 25-Jan-2017 16:38:08
+
+% Begin initialization code - DO NOT EDIT
+gui_Singleton = 1;
+gui_State = struct('gui_Name',       mfilename, ...
+    'gui_Singleton',  gui_Singleton, ...
+    'gui_OpeningFcn', @svca4_createSVCAGui_OpeningFcn, ...
+    'gui_OutputFcn',  @svca4_createSVCAGui_OutputFcn, ...
+    'gui_LayoutFcn',  [] , ...
+    'gui_Callback',   []);
+if nargin && ischar(varargin{1})
+    gui_State.gui_Callback = str2func(varargin{1});
+end
+
+if nargout
+    [varargout{1:nargout}] = gui_mainfcn(gui_State, varargin{:});
+else
+    gui_mainfcn(gui_State, varargin{:});
+end
+% End initialization code - DO NOT EDIT
+
+% --- Executes just before svca4_createSVCAGui is made visible.
+function svca4_createSVCAGui_OpeningFcn(hObject, eventdata, handles, varargin)
+
+% Update handles structuref
+guidata(hObject, handles);
+
+global svca4
+
+% --- Outputs from this function are returned to the command line.
+function varargout = svca4_createSVCAGui_OutputFcn(hObject, eventdata, handles)
+global svca4
+
+varargout{1} = svca4;
+%delete(handles.figure1);
+
+% --- Executes on button press in out_path.
+function out_path_Callback(hObject, eventdata, handles)
+global svca4
+if get(hObject,'Value') == 1
+    svca4.outputPath = uigetdir('','Select the output PATH');
+end
+hObject.Value = 0;
+
+% --- Executes on button press in PET_data.
+function PET_data_Callback(hObject, eventdata, handles)
+global svca4
+
+if get(hObject,'Value') == 1
+    [svca4.PET_list, svca4.PET_dir] = uigetfile({'*.nii','*.nii.gz'},'Select the PET data','MultiSelect','on');
+end
+hObject.Value = 0;
+
+% --- Executes on button press in t1_data.
+function t1_data_Callback(hObject, eventdata, handles)
+global svca4
+
+if get(hObject,'Value') == 1
+    [svca4.MRI_list, svca4.MRI_dir] = uigetfile({'*.nii','*.nii.gz'},'Select MRI files','MultiSelect','on');
+end
+hObject.Value = 0;
+
+% --- Executes on button press in brain_masks.
+function brain_masks_Callback(hObject, eventdata, handles)
+global svca4
+
+if get(hObject,'Value') == 1
+    [svca4.MASK_list, svca4.MASK_dir] = uigetfile({'*.nii','*.nii.gz'},'Select brain masks','MultiSelect','on');
+end
+hObject.Value = 0;
+
+% --- Executes on button press in gmwm_masks.
+function gmwm_masks_Callback(hObject, eventdata, handles)
+global svca4
+
+if get(hObject,'Value') == 1
+    [svca4.SEG_list, svca4.SEG_dir] = uigetfile({'*.nii','*.nii.gz'},'Select segmented MRI files','MultiSelect','on');
+end
+hObject.Value = 0;
+
+% --- Executes on button press in venous_masks.
+function venous_masks_Callback(hObject, eventdata, handles)
+global svca4
+
+if get(hObject,'Value') == 1
+    [svca4.BANANA_list svca4.BANANA_dir] = uigetfile({'*.nii','*.nii.gz'},'Select Venous sinus masks','MultiSelect','on');
+end
+hObject.Value = 0;
+
+% --- Executes on button press in tspo_masks.
+function tspo_masks_Callback(hObject, eventdata, handles)
+global svca4
+
+if get(hObject,'Value') == 1
+    if isfield(svca4,'TSPO_sel')
+        [svca4.INF_list, svca4.INF_dir] = uigetfile({'*.nii','*.nii.gz'},'Select TSPO masks','MultiSelect','on');
+        if length(svca4.INF_list) < size(svca4.PET_list,2)
+            tmp = cell(1,size(svca4.PET_list,2));
+            tmp(1,svca4.TSPO_sel) = svca4.INF_list;
+            svca4.INF_list = tmp;
+        end
+    else warndlg('You need to set the TSPO class subjects first then try again!')
+    end
+end
+hObject.Value = 0;
+
+% --- Executes on button press in time_data.
+function time_data_Callback(hObject, eventdata, handles)
+global svca4
+
+if get(hObject,'Value') == 1
+    [svca4.TIMES, svca4.TIMES_dir] = uigetfile({'*.txt'},'Select acquisition time files','MultiSelect','on');
+    times = readtable(fullfile(svca4.TIMES_dir, svca4.TIMES));
+    svca4.PET_standardStartTimes = times.Start;
+    svca4.PET_standardMidTimes = times.Mid;
+    svca4.PET_standardDurations = times.Duration;
+    svca4.PET_standardEndTimes = times.End;
+end
+hObject.Value = 0;
+
+% --- Executes when user attempts to close figure1.
+function figure1_CloseRequestFcn(hObject, eventdata, handles)
+if isequal(get(hObject, 'waitstatus'), 'waiting')
+    % The GUI is still in UIWAIT, us UIRESUME
+    uiresume(hObject);
+else
+    % The GUI is no longer waiting, just close it
+    delete(hObject);
+end
+
+% --- Executes on selection change in max_.
+function max__Callback(hObject, eventdata, handles)
+global svca4
+svca4.nFrames = str2num(get(hObject,'String'));
+
+% --- Executes during object creation, after setting all properties.
+function max__CreateFcn(hObject, eventdata, handles,varargin)
+if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
+    set(hObject,'BackgroundColor','white');
+end
+
+% Hint: edit controls usually have a white background on Windows.
+%       See ISPC and COMPUTER.
+if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
+    set(hObject,'BackgroundColor','white');
+end
+
+function target_subs_Callback(hObject, eventdata, handles)
+global svca4
+
+svca4.targetIDs = str2num(get(hObject,'String'));
+
+% --- Executes during object creation, after setting all properties.
+function target_subs_CreateFcn(hObject, eventdata, handles)
+if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
+    set(hObject,'BackgroundColor','white');
+end
+
+function blood_subs_Callback(hObject, eventdata, handles)
+global svca4
+
+svca4.BLOOD_sel = str2num(get(hObject,'String'));
+
+% --- Executes during object creation, after setting all properties.
+function blood_subs_CreateFcn(hObject, eventdata, handles)
+if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
+    set(hObject,'BackgroundColor','white');
+end
+
+function bloodFrameNo_Callback(hObject, eventdata, handles)
+global svca4
+
+svca4.BLOOD_frames = str2num(get(hObject,'String'));
+
+% --- Executes during object creation, after setting all properties.
+function bloodFrameNo_CreateFcn(hObject, eventdata, handles)
+
+% Hint: edit controls usually have a white background on Windows.
+%       See ISPC and COMPUTER.
+if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
+    set(hObject,'BackgroundColor','white');
+end
+
+function bloodPixNo_Callback(hObject, eventdata, handles)
+global svca4
+svca4.BLOOD_num_pixels = str2double(get(hObject,'String'));
+
+% --- Executes during object creation, after setting all properties.
+function bloodPixNo_CreateFcn(hObject, eventdata, handles)
+
+% Hint: edit controls usually have a white background on Windows.
+%       See ISPC and COMPUTER.
+if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
+    set(hObject,'BackgroundColor','white');
+end
+
+function gmwm_subs_Callback(hObject, eventdata, handles)
+global svca4
+
+svca4.GMWM_sel = str2num(get(hObject,'String'));
+
+% --- Executes during object creation, after setting all properties.
+function gmwm_subs_CreateFcn(hObject, eventdata, handles)
+
+if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
+    set(hObject,'BackgroundColor','white');
+end
+
+function gm_erode_Callback(hObject, eventdata, handles)
+global svca4
+svca4.GMWMerodeParameter = str2double(get(hObject,'String'));
+
+% --- Executes during object creation, after setting all properties.
+function gm_erode_CreateFcn(hObject, eventdata, handles)
+
+% Hint: edit controls usually have a white background on Windows.
+%       See ISPC and COMPUTER.
+if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
+    set(hObject,'BackgroundColor','white');
+end
+
+function tspo_dilate_Callback(hObject, eventdata, handles)
+global svca4
+svca4.TSPODilateParameter = str2double(get(hObject,'String'));
+
+% --- Executes during object creation, after setting all properties.
+function tspo_dilate_CreateFcn(hObject, eventdata, handles)
+
+% Hint: edit controls usually have a white background on Windows.
+%       See ISPC and COMPUTER.
+if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
+    set(hObject,'BackgroundColor','white');
+end
+
+function tspo_subs_Callback(hObject, eventdata, handles)
+global svca4
+
+svca4.TSPO_sel = str2num(get(hObject,'String'));
+guidata(hObject, handles);
+
+% --- Executes during object creation, after setting all properties.
+function tspo_subs_CreateFcn(hObject, eventdata, handles)
+
+if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
+    set(hObject,'BackgroundColor','white');
+end
+
+% --- Executes on button press in save_svca4.
+function save_svca4_Callback(hObject, eventdata, handles)
+global svca4
+uisave('svca4', 'svca4.mat')
+
+function classSubs_Callback(hObject, eventdata, handles)
+global svca4
+
+svca4.classIDs = str2num(get(hObject,'String'));
+guidata(hObject, handles);
+
+% --- Executes during object creation, after setting all properties.
+function classSubs_CreateFcn(hObject, eventdata, handles)
+
+if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
+    set(hObject,'BackgroundColor','white');
+end