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196 Open 553 Closed
196 Open 553 Closed
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Issues list

Reading with ad.io.read_h5ad gives back csr_matrix even when saved with csr_array Bug 🐛 Triage 🩺
#1837 opened Jan 21, 2025 by alam-shahul
2 of 3 tasks
1
Read/write errors when / is in var names backend: zarr Bug 🐛 topic: io
#1834 opened Jan 20, 2025 by LucaMarconato
2 of 3 tasks
2
Support zarr v3 enhancement
#1817 opened Jan 9, 2025 by Koncopd
3 tasks done
1
2
Initializing AnnData without X but with layers errors Bug 🐛
#1816 opened Jan 9, 2025 by ilan-gold
3 tasks done
0.11.4
1
Make anndata.utils.asarray part of public API enhancement Triage 🩺
#1815 opened Jan 8, 2025 by jan-engelmann
Broken pytest with 8.3.4 only on Azure Bug 🐛
#1787 opened Dec 3, 2024 by ilan-gold
2
anndata initializer does not verify indices match on layers Bug 🐛
#1769 opened Nov 16, 2024 by amcpherson
3 tasks done
6
Add support for sparse arrays (pydata) to .varp and .obsp fields enhancement type: sparse 🫥
#1731 opened Oct 22, 2024 by jkobject
5
Refactor ad.concat enhancement topic: api
#1715 opened Oct 16, 2024 by ilan-gold
@ilan-gold
.experimental.concat_on_disk fails to properly infer indptr dtype for the final object Bug 🐛
#1709 opened Oct 10, 2024 by jacobkimmel
3 tasks done
0.12.0
@ilan-gold
5
IO support for pandas datetime format enhancement topic: io type: dataframe 🧮
#1708 opened Oct 9, 2024 by le-ander
2 of 3 tasks
@ilan-gold
1
Allow dispatched write_elem without clearing Zarr store root enhancement
#1704 opened Oct 2, 2024 by keller-mark
1
Add official testing.anndata API enhancement testing topic: api
#1699 opened Sep 26, 2024 by flying-sheep
3 tasks
0.12.0
@flying-sheep
support gene panel selection/adaptation enhancement
#1697 opened Sep 26, 2024 by mojtababahrami 0.12.0
1
0.11: add doc redirects stale
#1695 opened Sep 24, 2024 by flying-sheep
1
Writing dict in uns with many keys is slow performance 🐌
#1684 opened Sep 21, 2024 by grst
2 of 3 tasks
0.12.0
@ilan-gold
5
remove deprecated anndata.read enhancement topic: io
#1683 opened Sep 20, 2024 by ilan-gold 0.12.0
1
@ilan-gold
2
Duplicates in index throw error during make_index_unique Bug 🐛 Needs info❔ stale
#1670 opened Sep 11, 2024 by lesolorzanov
2
(feat): full release automation enhancement
#1655 opened Sep 4, 2024 by ilan-gold
@ilan-gold
(chore): clean up use of spmatrix and sparray enhancement
#1649 opened Sep 4, 2024 by ilan-gold 0.12.0
1
@ilan-gold
Trigger CI Jobs in other Core Repos enhancement
#1628 opened Aug 29, 2024 by ilan-gold
2
Writing a h5py.Dataset loads the whole thing into memory Bug 🐛 performance 🐌 stale
#1623 opened Aug 28, 2024 by ivirshup
3 tasks done
1
@ivirshup
2
Adding multiple "visits" (clinical data) to a single .obs stale
#1617 opened Aug 28, 2024 by Rafael-Silva-Oliveira
1
Add parameter for more resilient concat_on_disk enhancement topic: api topic: combining topic: io
#1602 opened Aug 21, 2024 by DingWB
3 tasks done
4
backed="r" is leaking memory Bug 🐛 Needs info❔ stale
#1597 opened Aug 14, 2024 by agemagician
2 of 3 tasks
@ilan-gold
2
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