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11 changes: 11 additions & 0 deletions .github/dependabot.yml
Original file line number Diff line number Diff line change
Expand Up @@ -8,3 +8,14 @@ updates:
schedule:
# Check for updates to GitHub Actions every week
interval: "weekly"

- package-ecosystem: "pip"
directories:
- "/starfish/REQUIREMENTS-STRICT.txt"
- "/requirements/REQUIREMENTS-CI.txt"
- "/requirements/REQUIREMENTS-NAPARI-CI.txt"
- "/requirements/REQUIREMENTS-JUPYTER.txt"
schedule:
interval: "weekly"
# Disable version updates (allows only security updates)
open-pull-requests-limit: 0
2 changes: 1 addition & 1 deletion requirements/REQUIREMENTS-CI.txt
Original file line number Diff line number Diff line change
Expand Up @@ -143,7 +143,7 @@ threadpoolctl==3.6.0
tifffile==2024.8.30
tinycss2==1.4.0
tomli==2.2.1
tornado==6.4.2
tornado==6.5.1
tqdm==4.67.1
trackpy==0.6.4
traitlets==5.14.3
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2 changes: 1 addition & 1 deletion requirements/REQUIREMENTS-CI.txt.in
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@@ -1,6 +1,6 @@
# requirements to run CI except for napari
# constrain the CI requirements to packages already in REQUIREMENTS-STRICT.txt
-c ../starfish/REQUIREMENTS-STRICT.txt
-r ../starfish/REQUIREMENTS-STRICT.txt
build
flake8
flake8-import-order
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2 changes: 1 addition & 1 deletion requirements/REQUIREMENTS-JUPYTER.txt
Original file line number Diff line number Diff line change
Expand Up @@ -124,7 +124,7 @@ threadpoolctl==3.6.0
tifffile==2024.8.30
tinycss2==1.4.0
tomli==2.2.1
tornado==6.4.2
tornado==6.5.1
tqdm==4.67.1
trackpy==0.6.4
traitlets==5.14.3
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2 changes: 1 addition & 1 deletion requirements/REQUIREMENTS-NAPARI-CI.txt
Original file line number Diff line number Diff line change
Expand Up @@ -143,7 +143,7 @@ tifffile==2024.8.30
tomli==2.2.1
tomli_w==1.2.0
toolz==1.0.0
tornado==6.4.2
tornado==6.5.1
tqdm==4.67.1
trackpy==0.6.4
traitlets==5.14.3
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2 changes: 1 addition & 1 deletion requirements/REQUIREMENTS-NAPARI-CI.txt.in
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
# requirements to run napari and CI for napari
# constrain the NAPARI-CI requirements to packages already in REQUIREMENTS-CI.txt
-c REQUIREMENTS-CI.txt
-r REQUIREMENTS-CI.txt
# napari 0.4.18 made point sizes only isotropic: https://forum.image.sc/t/anisotropic-point-sizes/83388
napari[all]>0.4.17
pytest-qt
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