Barbed binding site#32

Closed

blairlyons wants to merge 11 commits intosimularium:mainfrom

blairlyons:barbed-binding-site

Commits on Feb 15, 2025

obstacle can have nonzero diff coeff and is confined to a box along the x axis
Blair Lyons
committed
obstacle position can be set at a given stride
Blair Lyons
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add repulsions for free actins
Blair Lyons
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add position_obstacle_stride to default parameters
Blair Lyons
committed

Commits on Mar 21, 2025

WIP create membrane with a lattice of two sheets of particles, TODO constraints
Blair Lyons
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Commits on Mar 22, 2025

membrane tested with readdy, TODO debug box potentials
Blair Lyons
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Commits on Mar 24, 2025

fixed edge box potentials
Blair Lyons
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add repulsions between actin and membrane
Blair Lyons
committed

Commits on Mar 28, 2025

add an extra box potential (that can be used as a membrane obstacle)
Blair Lyons
committed

Commits on May 6, 2025

binding site particle to define a local binding pocket for barbed actin
Blair Lyons
committed

Commits on May 19, 2025

fix reaction error
Blair Lyons
committed