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smishra677/README.md

Hi, I’m Sarthak Mishra 👋

🎓 PhD Candidate in Computer Science @ Hahn Lab @ Indiana University Bloomington
🧬 Computational Phylogenetics · Gene–Species Tree Reconciliation

🔬 Research Interests

  • Gene tree / species tree discordance
  • Duplication–loss + MSC-based models
  • Algorithmic and statistical phylogenetics
  • Introgression detection and direction inference

📁 Repository Activity

📊 GitHub Stats

📌 Selected Projects

  • DAFT — Discordant Attachment Frequency Tool for detecting and characterizing introgression from species trees and gene trees
  • reconcILS — reconciliation under duplication–loss–coalescence models
  • NoDEAR — No Disequilibrium Estimation of Accurate Recombination

(See pinned repositories below 👇)

📫 Contact

Pinned Loading

  1. reconcILS reconcILS Public

    Python 7

  2. NoDEAR NoDEAR Public

    Jupyter Notebook 1

  3. Distribution-of-Gene-Tree-Topologies-with-Duplication-Loss-and-Coalescence Distribution-of-Gene-Tree-Topologies-with-Duplication-Loss-and-Coalescence Public

    Distribution of Gene Tree Topologies with Duplication, Loss, and Coalescence

    Python

  4. DAFT DAFT Public

    Discordant attachment frequency tool

    Python 2