Add colorbar and an option to plot the velocities to plot_traj()#800
Open
T0T0R wants to merge 1 commit intosoft-matter:masterfrom
Open
Add colorbar and an option to plot the velocities to plot_traj()#800T0T0R wants to merge 1 commit intosoft-matter:masterfrom
T0T0R wants to merge 1 commit intosoft-matter:masterfrom
Conversation
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
A color bar can now be added when plotting the trajectories, which is helpful with

colorby='frame'. The title of this colorbar can be selected between "Frame number" or "Time (s)".Example with
tp.plot_traj(t, mpp=1.0, fps=24, colorby='frame', cmap='cividis', colorbar_units='frames', superimpose=background):Example with

tp.plot_traj(t, mpp=1.0, fps=24, colorby='frame', cmap='cividis', colorbar_units='real', superimpose=background):Another feature is added,

colorby='velocity'allowing to color the trajectories by the speed of the objects. The title of the color bar can be selected between "Speed (px/s)" or "Speed (µm/s)".Example with
tp.plot_traj(t, mpp=1.0, fps=24, colorby='velocity', cmap='inferno', colorbar_units='frames', superimpose=background);:Example with

tp.plot_traj(t, mpp=1.0, fps=24, colorby='velocity', cmap='inferno', colorbar_units='real', superimpose=background);: