Fix BlobDetector coordinate extraction and ensure consistent results across dimensionalities#2154

Merged

shachafl merged 16 commits intomasterfrom

copilot/fix-blobdetector-results

Nov 24, 2025

Commits on Nov 21, 2025

Initial plan

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Fix BlobDetector 2D indexing bug causing incorrect y-values and radius

Copilot
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Fix whitespace linting issues in test file

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Address code review feedback - improve test documentation and tolerance

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Polish test comments based on final code review feedback

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Fix test to correctly access spot_attrs via round/channel indexing

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Handle both 2D and 3D data_image when is_volume=False

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Add test for BlobDetector with is_volume=False and reference_image

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Fix blob coordinate extraction based on fitted_blobs_array shape

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Squeeze singleton z-dimension before blob detection for consistency

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Refactor singleton z-dimension handling for clarity

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Fix anisotropic sigma handling when squeezing singleton z-dimension

Copilot
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Fix anisotropic sigma detection logic using data dimensionality

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cleaning up after copilot
shachafl
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updating some tests due to improved blob detection
shachafl
committed

Commits on Nov 24, 2025

Fix BlobDetector round/channel assignment when is_volume=False (#2160)

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shachafl
authored