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Added write method to client-side and server-side file manager.
Individual log files for each CLI session are now saved to .bugzoo/logs.
Added better error reporting to CLI, which now reports the location of the
relevant log file to the user.
Changes
Switched implementation of command-line interface from argparse to cement.
Replaced bug uninstall command with bug rm and bug remove commands.
Replaced tool uninstall command with tool rm and tool remove
commands.
Refactored core data structures using attrs.
Updated patch command to use patch rather than git apply to avoid
errors when using containers that do not have an appropriate version of
Git installed.
Bug Fixes
Resolved permissions issue when instrumenting source files by using the
file manager's read/write API to apply coverage.