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Quick hack at an Apptainer-only backend. Unlike the LSF backend, this only works if apptainer is available to execute locally. Use the backend type "apptainer" instead of "lsf_apptainer", and remove the LSF queue configs to get it configured.

For all contributors:

  • You have added a few sentences describing the PR here.
  • You have added yourself or the appropriate individual as the assignee.
  • You have added at least one relevant code reviewer to the PR.
  • Your code builds clean without any errors or warnings.
  • You have added tests (when appropriate).
  • You have added an entry in the CHANGELOG (when appropriate).
  • You have updated the README or other documentation to account for these changes (when appropriate).
  • You have either (a) made a PR to the next branch in the sprocket.bio repository [if you are a Sprocket team member] or (b) have suggested any changes you think need to be made to sprocket.bio in the description of your PR [if you are an external contributor].

For PRs containing lint rule changes:

  • You have updated any and all effected entries within RULES.md.
  • You have added a test case in crates/wdl-lint/tests/lints that covers every
    possible diagnostic emitted for the rule within the file where the rule
    is implemented.

@acfoltzer acfoltzer self-assigned this Sep 30, 2025
@peterhuene
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@acfoltzer can this be closed now that the hackathon is over?

@acfoltzer
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Yep, there's not really much here that isn't present back on main.

@acfoltzer acfoltzer closed this Oct 14, 2025
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3 participants