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Here's the scripts for bioinformatics packages installations and example workflow of running samples using the installed package in R, Python and Bash.

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MetaPhlAn-4.0.6/MetaPhlAn-4.0.6
MetaPhlAn-4.0.6/MetaPhlAn-4.0.6
 
 
AWS CLI installation in Ubuntu
AWS CLI installation in Ubuntu
 
 
Biobakery4 - Kneaddata > Metaphlan4.0.6 > Humann3.8
Biobakery4 - Kneaddata > Metaphlan4.0.6 > Humann3.8
 
 
Docker set up documentation
Docker set up documentation
 
 
Dockerfile_humann
Dockerfile_humann
 
 
Dockerfile_jj
Dockerfile_jj
 
 
Dockerfile_kneaddata
Dockerfile_kneaddata
 
 
Dockerfile_metaphlan4
Dockerfile_metaphlan4
 
 
Gapseq_installation
Gapseq_installation
 
 
Gapseq_testing
Gapseq_testing
 
 
Graphlan
Graphlan
 
 
PAPRICA_16S
PAPRICA_16S
 
 
Trimming_fastq
Trimming_fastq
 
 
Ubuntu and Conda installation
Ubuntu and Conda installation
 
 
dada2_deunique_rev.py
dada2_deunique_rev.py
 
 
graphlan_colour.txt
graphlan_colour.txt
 
 
humann_join_tables.py
humann_join_tables.py
 
 
humann_renorm_table.py
humann_renorm_table.py
 
 
merge_metaphlan_tables_v4.py
merge_metaphlan_tables_v4.py
 
 
metaphlan4.0.1_jj.sh
metaphlan4.0.1_jj.sh
 
 
micop_run.sh
micop_run.sh
 
 
siamcat machine learning
siamcat machine learning
 
 

About

Here's the scripts for bioinformatics packages installations and example workflow of running samples using the installed package in R, Python and Bash.

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