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.github/workflows
.github/workflows
 
 
phylogenetics-on-cluster
phylogenetics-on-cluster
 
 
README.md
README.md
 
 
SRA_download.sh
SRA_download.sh
 
 
batch_filename_change_forloop.sh
batch_filename_change_forloop.sh
 
 
batch_filename_change_in_dir.py
batch_filename_change_in_dir.py
 
 
change_ext_parse_globs_loop_ip.py
change_ext_parse_globs_loop_ip.py
 
 
change_ext_parse_to_csv_abspathfiles.py
change_ext_parse_to_csv_abspathfiles.py
 
 
filename-change-forloop-perl.pl
filename-change-forloop-perl.pl
 
 
job_array_example.sh
job_array_example.sh
 
 
manipulating_nucl_prot_strings.py
manipulating_nucl_prot_strings.py
 
 
ncbi-dataset-download.sh
ncbi-dataset-download.sh
 
 
read_and_replace_fasta_obsolete.py
read_and_replace_fasta_obsolete.py
 
 
rename_filename_simple.py
rename_filename_simple.py
 
 
rename_files_in_dir_prefix.py
rename_files_in_dir_prefix.py
 
 
replace_fasta_multi_special_char.py
replace_fasta_multi_special_char.py
 
 
replace_fasta_special_char.py
replace_fasta_special_char.py
 
 
trimmomatic_array.sh
trimmomatic_array.sh
 
 
write_fasta_to_file.py
write_fasta_to_file.py
 
 

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Basic Scripts for Day to Day Bioinformatics

This folder contains rudimentary Python, Perl, and Shell scripts for manipulating common bioinformatic output and task input files. Updates will be made regularly as Shweta embarks on this programming journey.

** Not intended for distribution **

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Basic Scripts for Day to Day Bioinformatics

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