Skip to content

Navigation Menu

Appearance settings

sys-bio

Explore
By company size
By use case
By industry
View all solutions
Topics
- AI
- DevOps
- Security
- Software Development
- View all
Explore
- GitHub Sponsors
  Fund open source developers
- The ReadME Project
  GitHub community articles
Repositories
- Enterprise platform
  AI-powered developer platform
Available add-ons
Pricing

Search code, repositories, users, issues, pull requests...

Search

Clear

Search syntax tips

Provide feedback

We read every piece of feedback, and take your input very seriously.

Include my email address so I can be contacted

Saved searches

Use saved searches to filter your results more quickly

Name

Query

To see all available qualifiers, see our documentation.

Appearance settings

You signed in with another tab or window. Reload to refresh your session. You signed out in another tab or window. Reload to refresh your session. You switched accounts on another tab or window. Reload to refresh your session.

Dismiss alert

UW Sauro Lab

26 followers
Seattle
http://www.sys-bio.org
hsauro@u.washington.edu

Overview
Repositories
Projects
Packages
People

More

Overview
Repositories
Projects
Packages
People

Pinned Loading

tellurium tellurium Public

Python Environment for Modeling and Simulating Biological Systems

Python 116 37
roadrunner roadrunner Public

Forked from AndySomogyi/sbmlsolver

libRoadRunner: A high-performance SBML simulator

C++ 48 25

Repositories

Loading

Type

Select type

All Public Sources Forks Archived Mirrors Templates

Language

Select language

All C C++ CMake Component Pascal HTML JavaScript Julia Jupyter Notebook LLVM Pascal Python SWIG TypeScript

Sort

Select order

Last updated Name Stars

Showing 10 of 111 repositories

SimBioUI Public
Web systems biology simulator

sys-bio/SimBioUI’s past year of commit activity

JavaScript 0 MIT 2 15 0 Updated May 24, 2025
SimpleSEDML Public
A simple API for using the Simulation Experiment Description Markup Language (SED-ML)

sys-bio/SimpleSEDML’s past year of commit activity

Python 0 MIT 1 7 1 Updated May 23, 2025
biomodels_cache Public
Client and admin API for accessing BioModels

sys-bio/biomodels_cache’s past year of commit activity

Python 0 MIT 0 0 0 Updated May 23, 2025
temp-biomodels Public
Temporary place for coordination of updating existing Biomodels

sys-bio/temp-biomodels’s past year of commit activity

Component Pascal 2 CC0-1.0 2 15 0 Updated May 21, 2025
pyomexmeta-binder-notebook Public
About A demonstration of using pyomexmeta - the Python interface to libOmexMeta and the OMEX Metadata Specification.

sys-bio/pyomexmeta-binder-notebook’s past year of commit activity

Jupyter Notebook 0 Apache-2.0 0 0 0 Updated May 20, 2025
libOmexMeta Public
libOmexMeta is a library aimed at providing developer-level support for reading, writing, editing and managing semantic annotations for biosimulation models.

sys-bio/libOmexMeta’s past year of commit activity

C 8 Apache-2.0 6 34 1 Updated May 20, 2025
AntimonyEditor Public
Antimony Web Editor: A Web Editor for the Antimony Modeling Language

sys-bio/AntimonyEditor’s past year of commit activity

TypeScript 0 MIT 2 19 2 Updated May 17, 2025
antimony Public

sys-bio/antimony’s past year of commit activity

C++ 18 BSD-3-Clause 4 25 0 Updated May 16, 2025
SBMLNetwork Public Forked from adelhpour/SBMLNetwork
SBMLNetwork is a library designed to enable software developers and systems biologists to interact with the graphical representation of SBML (Systems Biology Markup Language) models.

sys-bio/SBMLNetwork’s past year of commit activity

C++ 0 MIT 1 4 0 Updated May 15, 2025
IridiumSimulator Public
Interactive desktop simulator for systems biology

sys-bio/IridiumSimulator’s past year of commit activity

Pascal 3 MIT 2 0 1 Updated May 12, 2025

View all repositories

People

Top languages

Loading…

Uh oh!

There was an error while loading. Please reload this page.

Most used topics

Loading…

Uh oh!

There was an error while loading. Please reload this page.

Footer

© 2025 GitHub, Inc.

Footer navigation

Terms
Privacy
Security
Status
Docs
Contact

You can’t perform that action at this time.