fasp

FASP: A FASTA Processor

Install

pip3 install git+https://github.com/tamasakian/fasp.git

If you want to install in editable mode;

pip3 install -e git+https://github.com/tamasakian/fasp.git#egg=fasp

Usage

python3 -m fasp <function> <args>

For example, you want to extract upstream region;

python3 -m fasp slice_sequence_by_upstream_region \
    input_filename \
    output_filename \
    output_id \
    output_description \
    strand \
    start \
    end \
    bp