[jonas-fuchs]

New features:

• Database comparison tab: compare 2–3 project databases that share a reference accession (matched by accession), visualizing rule overlap with a Venn diagram and heatmap. Comparison identity is (feature, position, reference, mutation, drug) and covers atomic single mutations only; a new backend service (compare_databases.py) plus a catalog endpoint expose reference accessions so the frontend can constrain which databases are comparable.
• Dark mode: a theme system with light/dark/system options, a toggle component, persisted preference, and dark-aware styling across plots and dashboards.
• Guided tour steps for the analyze page.

Bug fixes:

• Production blank page: router-dependent hooks (useDashboardLogic calling useLocation/useNavigate) were mounted outside BrowserRouter, crashing the production bundle before first paint. Fixed by introducing AppShell and mounting router-dependent hooks inside the router; covered by a bare-mount regression test.
• Empty database state in the mutations view no longer renders broken/blank tiles.

Improvements:

• Visual redesign: minimalistic styling pass, removal of card-in-card effects, flex-based tile sizing, mobile layout adjustments, restyled database dashboard, and rewritten About page content (large PNG asset removed).
• CSS architecture: the monolithic ~5,500-line styles.css was split into scoped stylesheets (global, components, layout, and per-page files).
• Frontend structure: tab components reorganized into page components with a shared AppShell, and routes/tests restructured accordingly.
• Backend audit refactor: main.py slimmed with logic moved into route modules (e.g. routes/artifacts.py for bundle downloads); error messages no longer include internal paths; respro CLI subprocesses now run with a hard timeout slightly above the RQ job timeout so orphaned processes cannot run indefinitely; stale configuration and unused helpers removed.

Breaking changes:

None (the tab→page rename and backend route extraction are internal; API behavior is unchanged apart from sanitized error messages).

[github-actions]

Dependency Review

The following issues were found:

• ❌ 3 vulnerable package(s)
• ✅ 0 package(s) with incompatible licenses
• ✅ 0 package(s) with invalid SPDX license definitions
• ✅ 0 package(s) with unknown licenses.
• ⚠️ 26 packages with OpenSSF Scorecard issues.

View full job summary

[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.

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