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Release 0.1.9#42

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moinfar merged 44 commits into
mainfrom
release_0_1_9
Jul 9, 2025
Merged

Release 0.1.9#42
moinfar merged 44 commits into
mainfrom
release_0_1_9

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@moinfar

@moinfar moinfar commented Jul 1, 2025

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  • Add DRVI-APnoEXP as a baseline
  • Improve docs
  • Improve github CI
  • Fix codecov reports
  • Fix readthedocs issues
  • Improve rtpoing for all functions

moinfar and others added 26 commits July 1, 2025 12:33
updates:
- [github.com/astral-sh/ruff-pre-commit: v0.11.13 → v0.12.1](astral-sh/ruff-pre-commit@v0.11.13...v0.12.1)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
updates:
- [github.com/astral-sh/ruff-pre-commit: v0.11.13 → v0.12.2](astral-sh/ruff-pre-commit@v0.11.13...v0.12.2)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Amir Ali Moinfar <moinfar.amirali@gmail.com>
@codecov

codecov Bot commented Jul 9, 2025

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Codecov Report

❌ Patch coverage is 90.47619% with 18 lines in your changes missing coverage. Please review.
✅ Project coverage is 69.65%. Comparing base (e2ee323) to head (a182908).
⚠️ Report is 16 commits behind head on main.

Files with missing lines Patch % Lines
src/drvi/nn_modules/noise_model.py 44.44% 10 Missing ⚠️
...i/scvi_tools_based/model/base/_generative_mixin.py 83.33% 2 Missing ⚠️
src/drvi/scvi_tools_based/module/_drvi.py 85.71% 2 Missing ⚠️
src/drvi/nn_modules/embedding.py 96.87% 1 Missing ⚠️
src/drvi/nn_modules/feature_interface.py 93.33% 1 Missing ⚠️
src/drvi/nn_modules/prior.py 93.33% 1 Missing ⚠️
src/drvi/scvi_tools_based/nn/_base_components.py 94.11% 1 Missing ⚠️
Additional details and impacted files
@@             Coverage Diff             @@
##             main      #42       +/-   ##
===========================================
+ Coverage   54.43%   69.65%   +15.21%     
===========================================
  Files          48       49        +1     
  Lines        2320     2524      +204     
===========================================
+ Hits         1263     1758      +495     
+ Misses       1057      766      -291     
Files with missing lines Coverage Δ
src/drvi/nn_modules/encodig.py 92.68% <100.00%> (+0.18%) ⬆️
src/drvi/nn_modules/freezable.py 100.00% <100.00%> (ø)
src/drvi/nn_modules/layer/factory.py 75.00% <100.00%> (+0.58%) ⬆️
src/drvi/nn_modules/layer/linear_layer.py 97.56% <100.00%> (+0.12%) ⬆️
src/drvi/nn_modules/layer/structures.py 62.50% <100.00%> (+5.35%) ⬆️
src/drvi/scvi_tools_based/model/_drvi.py 76.05% <100.00%> (ø)
...c/drvi/scvi_tools_based/model/base/_archesmixin.py 71.85% <100.00%> (+0.21%) ⬆️
src/drvi/utils/metrics/_aggregation.py 100.00% <100.00%> (+45.45%) ⬆️
src/drvi/utils/metrics/_benchmark.py 65.97% <ø> (ø)
src/drvi/utils/metrics/_pairwise.py 90.62% <100.00%> (+63.59%) ⬆️
... and 12 more
🚀 New features to boost your workflow:
  • ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.

@moinfar moinfar merged commit 90a5c73 into main Jul 9, 2025
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@moinfar moinfar deleted the release_0_1_9 branch July 9, 2025 15:46
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