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Release 0.1.11 - #57

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moinfar merged 31 commits into
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release_0_1_11
Nov 19, 2025
Merged

Release 0.1.11#57
moinfar merged 31 commits into
mainfrom
release_0_1_11

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@moinfar

@moinfar moinfar commented Nov 18, 2025

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updates:

pre-commit-ci Bot and others added 23 commits October 17, 2025 09:43
updates:
- [github.com/astral-sh/ruff-pre-commit: v0.12.2 → v0.14.0](astral-sh/ruff-pre-commit@v0.12.2...v0.14.0)
- [github.com/pre-commit/pre-commit-hooks: v5.0.0 → v6.0.0](pre-commit/pre-commit-hooks@v5.0.0...v6.0.0)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
* Support RnaSeqMixin

* Code Improvement

* BugFix

* BugFix

* BugFix

* BugFix for issue #46

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* decode in log space by default.
This aligns with traverse data's current settings.

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@codecov

codecov Bot commented Nov 18, 2025

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Codecov Report

❌ Patch coverage is 84.71338% with 24 lines in your changes missing coverage. Please review.
✅ Project coverage is 80.92%. Comparing base (31bfa06) to head (3aee971).
⚠️ Report is 24 commits behind head on main.

Files with missing lines Patch % Lines
src/drvi/scvi_tools_based/model/_drvi.py 75.60% 10 Missing ⚠️
src/drvi/nn_modules/noise_model.py 81.57% 7 Missing ⚠️
src/drvi/scvi_tools_based/nn/_base_components.py 78.57% 3 Missing ⚠️
...c/drvi/scvi_tools_based/model/base/_archesmixin.py 66.66% 2 Missing ⚠️
...i/scvi_tools_based/model/base/_generative_mixin.py 94.73% 1 Missing ⚠️
src/drvi/scvi_tools_based/module/_drvi.py 97.29% 1 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##             main      #57      +/-   ##
==========================================
+ Coverage   79.34%   80.92%   +1.57%     
==========================================
  Files          41       41              
  Lines        2184     2291     +107     
==========================================
+ Hits         1733     1854     +121     
+ Misses        451      437      -14     
Files with missing lines Coverage Δ
src/drvi/nn_modules/embedding.py 82.94% <100.00%> (+0.20%) ⬆️
...i/scvi_tools_based/model/base/_generative_mixin.py 77.57% <94.73%> (+1.52%) ⬆️
src/drvi/scvi_tools_based/module/_drvi.py 86.97% <97.29%> (+6.20%) ⬆️
...c/drvi/scvi_tools_based/model/base/_archesmixin.py 72.26% <66.66%> (+0.41%) ⬆️
src/drvi/scvi_tools_based/nn/_base_components.py 83.84% <78.57%> (-0.28%) ⬇️
src/drvi/nn_modules/noise_model.py 80.84% <81.57%> (+11.96%) ⬆️
src/drvi/scvi_tools_based/model/_drvi.py 87.65% <75.60%> (-12.35%) ⬇️
🚀 New features to boost your workflow:
  • ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.

pre-commit-ci Bot and others added 2 commits November 19, 2025 13:00
updates:
- [github.com/astral-sh/ruff-pre-commit: v0.12.2 → v0.14.5](astral-sh/ruff-pre-commit@v0.12.2...v0.14.5)
- [github.com/pre-commit/pre-commit-hooks: v5.0.0 → v6.0.0](pre-commit/pre-commit-hooks@v5.0.0...v6.0.0)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Amir Ali Moinfar <moinfar.amirali@gmail.com>
@moinfar
moinfar merged commit 3d5c996 into main Nov 19, 2025
9 checks passed
@moinfar
moinfar deleted the release_0_1_11 branch November 19, 2025 14:04
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decode_latent_samples returnsnon-library size normalised expression values

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