Releases: theislab/scPDAC
Releases · theislab/scPDAC
Release list
v.0.1.0
[0.1.0]
Added
- Atlas mapping via scArches surgery (
tl.extend_atlas) and fast embed-only
label transfer (tl.embed_and_predict). - Hierarchical MLP classifier (
tl.predict_labels,HierarchicalClassifier)
splitting malignant vs non-malignant before fine-grained typing. - Gene-panel alignment and quantile binning (
pp.get_genes,pp.align_to_genes,
pp.bin_data,pp.slice_and_bin) with manual human/mouse panels. - Pretrained human and mouse SCANVI models and classifier checkpoints, with
models.load_scanvi_modelandmodels.load_classifier_checkpoints. - Label-distribution plot (
pl.plot_label_distribution). - Training, conversion and SLURM scripts, plus tutorial notebooks and a
performance benchmark page.
Changed
- Load reference SCANVI models with scArches
load_query_data. - Made internal modules private (
_basic,_binning,_genes).