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Releases: theislab/scPDAC

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v.0.1.0

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@MDLDan MDLDan released this 01 Jul 16:01

[0.1.0]

Added

  • Atlas mapping via scArches surgery (tl.extend_atlas) and fast embed-only
    label transfer (tl.embed_and_predict).
  • Hierarchical MLP classifier (tl.predict_labels, HierarchicalClassifier)
    splitting malignant vs non-malignant before fine-grained typing.
  • Gene-panel alignment and quantile binning (pp.get_genes, pp.align_to_genes,
    pp.bin_data, pp.slice_and_bin) with manual human/mouse panels.
  • Pretrained human and mouse SCANVI models and classifier checkpoints, with
    models.load_scanvi_model and models.load_classifier_checkpoints.
  • Label-distribution plot (pl.plot_label_distribution).
  • Training, conversion and SLURM scripts, plus tutorial notebooks and a
    performance benchmark page.

Changed

  • Load reference SCANVI models with scArches load_query_data.
  • Made internal modules private (_basic, _binning, _genes).