Skip to content

Bugfix and feature release

Compare
Choose a tag to compare
@jeromekelleher jeromekelleher released this 05 Dec 15:28
8a39c40

This release fixes an important bug in the legacy ms compatible interface and is therefore strongly recommended of all mspms users.

Bug fixes:

  • Fix error in mspms output of tree spans. In previous versions, the length of genome spanned by trees in the newick output was incorrect in certain situations (specifically, when “invisible” recombinations are present so that two or more identical trees are printed out). Thanks to @fbaumdicker for spotting the problem. (@jeromekelleher, #837, #836)
  • Fix assertion tripped when we have very low recombination rates in the DTWF model. Thanks to @terhorst for the bug report. (@jeromekelleher, #833, #831).
  • Fix bug in memory allocation when simulating mutations on a tree sequence that already contains many mutations. Thanks to @santaci for the bug report. (@jeromekelleher, @petrelharp, #838, #806)

New features:

  • Add the new Census event, which allows us to place nodes on all extant branches at a given time (@gtsambos #799).
  • Improved error reporting for input parameters, in particular demographic events (#829).

Documentation: