initial import from svn

.gitignore

@@ -1,16 +1,17 @@
 *.rbc
 *.sassc
+.rvmrc
 .sass-cache
 capybara-*.html
 .rspec
+
 /.bundle
-/vendor/bundle
-/log/*
-/tmp/*
+/config/application.yml
+/config/database.yml
+/coverage/
 /db/*.sqlite3
+/log
 /public/system/*
-/coverage/
 /spec/tmp/*
-**.orig
-rerun.txt
-pickle-email-*.html
+/tmp/*
+/vendor/bundle

.ruby-gemset

@@ -0,0 +1 @@
+reu3

.ruby-version

@@ -0,0 +1 @@
+ruby-1.9.3-p392

Capfile

@@ -0,0 +1,4 @@
+load 'deploy'
+# Uncomment if you are using Rails' asset pipeline
+load 'deploy/assets'
+load 'config/deploy' # remove this line to skip loading any of the default tasks

Gemfile

@@ -0,0 +1,68 @@
+if RUBY_VERSION =~ /1.9/
+  Encoding.default_external = Encoding::UTF_8
+  Encoding.default_internal = Encoding::UTF_8
+end
+
+source 'http://rubygems.org'
+source 'http://gems.github.com'
+
+gem 'rails', '~>3.2.12'
+
+gem 'aasm'
+gem 'carmen'
+gem 'capistrano'
+# gem 'capistrano-database', :git => "git://github.com/jgrevich/capistrano-database.git"
+gem 'rvm-capistrano'
+
+gem 'devise'
+#gem 'exception_notification', :require => 'exception_notifier'
+gem 'figaro'
+gem 'formtastic'
+gem 'haml'
+gem 'jquery-rails'
+gem 'kaminari'
+gem 'mysql2'
+gem 'paperclip'
+gem 'rails_admin'
+
+# Use unicorn as the web server
+# gem 'unicorn'
+
+# To use debugger (ruby-debug for Ruby 1.8.7+, ruby-debug19 for Ruby 1.9.2+)
+# gem 'ruby-debug'
+# gem 'ruby-debug19', :require => 'ruby-debug'
+
+# Bundle the extra gems:
+# gem 'bj'
+# gem 'nokogiri'
+# gem 'sqlite3-ruby', :require => 'sqlite3'
+# gem 'aws-s3', :require => 'aws/s3'
+
+# Bundle gems for the local environment. Make sure to
+# put test-only gems in this group so their generators
+# and rake tasks are available in development mode:
+# group :development, :test do
+#   gem 'webrat'
+# end
+
+group :development, :test do
+#  gem 'bond'
+  gem 'bundler'
+  gem 'map_by_method'
+#  gem 'mocha'  
+  gem 'what_methods'
+  gem 'wirble'
+end
+
+# Gems used only for assets and not required
+# in production environments by default.
+group :assets do
+  gem 'bootstrap-sass', '~> 2.1.0.0'
+  gem 'bootstrap-datepicker-rails', :require => 'bootstrap-datepicker-rails', :git => 'git://github.com/Nerian/bootstrap-datepicker-rails.git'
+  gem 'coffee-rails', " ~> 3.2.0"
+  gem 'libv8', '~> 3.11.8'
+  gem 'sass-rails', " ~> 3.2.0"
+  gem 'font-awesome-sass-rails'
+  gem 'uglifier'
+  gem 'therubyracer'
+end

Gemfile.lock

@@ -0,0 +1,221 @@
+GIT
+  remote: git://github.com/Nerian/bootstrap-datepicker-rails.git
+  revision: 4dbdbc405229725ab800daa14b2a74878214f58b
+  specs:
+    bootstrap-datepicker-rails (1.0.0.4)
+      railties (>= 3.0)
+
+GEM
+  remote: http://rubygems.org/
+  remote: http://gems.github.com/
+  specs:
+    aasm (3.0.16)
+    actionmailer (3.2.13)
+      actionpack (= 3.2.13)
+      mail (~> 2.5.3)
+    actionpack (3.2.13)
+      activemodel (= 3.2.13)
+      activesupport (= 3.2.13)
+      builder (~> 3.0.0)
+      erubis (~> 2.7.0)
+      journey (~> 1.0.4)
+      rack (~> 1.4.5)
+      rack-cache (~> 1.2)
+      rack-test (~> 0.6.1)
+      sprockets (~> 2.2.1)
+    activemodel (3.2.13)
+      activesupport (= 3.2.13)
+      builder (~> 3.0.0)
+    activerecord (3.2.13)
+      activemodel (= 3.2.13)
+      activesupport (= 3.2.13)
+      arel (~> 3.0.2)
+      tzinfo (~> 0.3.29)
+    activeresource (3.2.13)
+      activemodel (= 3.2.13)
+      activesupport (= 3.2.13)
+    activesupport (3.2.13)
+      i18n (= 0.6.1)
+      multi_json (~> 1.0)
+    arel (3.0.2)
+    bcrypt-ruby (3.0.1)
+    bootstrap-sass (2.1.0.1)
+    builder (3.0.4)
+    capistrano (2.14.2)
+      highline
+      net-scp (>= 1.0.0)
+      net-sftp (>= 2.0.0)
+      net-ssh (>= 2.0.14)
+      net-ssh-gateway (>= 1.1.0)
+    carmen (0.2.13)
+    climate_control (0.0.3)
+      activesupport (>= 3.0)
+    cocaine (0.5.1)
+      climate_control (>= 0.0.3, < 1.0)
+    coffee-rails (3.2.2)
+      coffee-script (>= 2.2.0)
+      railties (~> 3.2.0)
+    coffee-script (2.2.0)
+      coffee-script-source
+      execjs
+    coffee-script-source (1.6.2)
+    devise (2.2.3)
+      bcrypt-ruby (~> 3.0)
+      orm_adapter (~> 0.1)
+      railties (~> 3.1)
+      warden (~> 1.2.1)
+    erubis (2.7.0)
+    execjs (1.4.0)
+      multi_json (~> 1.0)
+    figaro (0.6.3)
+      bundler (~> 1.0)
+      rails (>= 3, < 5)
+    font-awesome-sass-rails (3.0.2.2)
+      railties (>= 3.1.1)
+      sass-rails (>= 3.1.1)
+    formtastic (2.2.1)
+      actionpack (>= 3.0)
+    haml (3.1.8)
+    highline (1.6.18)
+    hike (1.2.2)
+    i18n (0.6.1)
+    journey (1.0.4)
+    jquery-rails (2.2.1)
+      railties (>= 3.0, < 5.0)
+      thor (>= 0.14, < 2.0)
+    jquery-ui-rails (3.0.1)
+      jquery-rails
+      railties (>= 3.1.0)
+    json (1.7.7)
+    kaminari (0.14.1)
+      actionpack (>= 3.0.0)
+      activesupport (>= 3.0.0)
+    libv8 (3.11.8.17)
+    mail (2.5.3)
+      i18n (>= 0.4.0)
+      mime-types (~> 1.16)
+      treetop (~> 1.4.8)
+    map_by_method (0.8.3)
+    mime-types (1.22)
+    multi_json (1.7.2)
+    mysql2 (0.3.11)
+    nested_form (0.3.2)
+    net-scp (1.1.0)
+      net-ssh (>= 2.6.5)
+    net-sftp (2.1.1)
+      net-ssh (>= 2.6.5)
+    net-ssh (2.6.7)
+    net-ssh-gateway (1.2.0)
+      net-ssh (>= 2.6.5)
+    nokogiri (1.5.9)
+    orm_adapter (0.4.0)
+    paperclip (3.4.1)
+      activemodel (>= 3.0.0)
+      activerecord (>= 3.0.0)
+      activesupport (>= 3.0.0)
+      cocaine (~> 0.5.0)
+      mime-types
+    polyglot (0.3.3)
+    rack (1.4.5)
+    rack-cache (1.2)
+      rack (>= 0.4)
+    rack-pjax (0.7.0)
+      nokogiri (~> 1.5)
+      rack (~> 1.3)
+    rack-ssl (1.3.3)
+      rack
+    rack-test (0.6.2)
+      rack (>= 1.0)
+    rails (3.2.13)
+      actionmailer (= 3.2.13)
+      actionpack (= 3.2.13)
+      activerecord (= 3.2.13)
+      activeresource (= 3.2.13)
+      activesupport (= 3.2.13)
+      bundler (~> 1.0)
+      railties (= 3.2.13)
+    rails_admin (0.4.2)
+      bootstrap-sass (~> 2.1)
+      builder (~> 3.0)
+      coffee-rails (~> 3.1)
+      font-awesome-sass-rails (~> 3.0, >= 3.0.0.1)
+      haml (~> 3.1)
+      jquery-rails (~> 2.1)
+      jquery-ui-rails (~> 3.0)
+      kaminari (~> 0.14)
+      nested_form (~> 0.2)
+      rack-pjax (~> 0.6)
+      rails (~> 3.1)
+      remotipart (~> 1.0)
+      sass-rails (~> 3.1)
+    railties (3.2.13)
+      actionpack (= 3.2.13)
+      activesupport (= 3.2.13)
+      rack-ssl (~> 1.3.2)
+      rake (>= 0.8.7)
+      rdoc (~> 3.4)
+      thor (>= 0.14.6, < 2.0)
+    rake (10.0.4)
+    rdoc (3.12.2)
+      json (~> 1.4)
+    ref (1.0.4)
+    remotipart (1.0.5)
+    rvm-capistrano (1.3.0)
+      capistrano (>= 2.0.0)
+    sass (3.2.7)
+    sass-rails (3.2.6)
+      railties (~> 3.2.0)
+      sass (>= 3.1.10)
+      tilt (~> 1.3)
+    sprockets (2.2.2)
+      hike (~> 1.2)
+      multi_json (~> 1.0)
+      rack (~> 1.0)
+      tilt (~> 1.1, != 1.3.0)
+    therubyracer (0.11.4)
+      libv8 (~> 3.11.8.12)
+      ref
+    thor (0.18.1)
+    tilt (1.3.7)
+    treetop (1.4.12)
+      polyglot
+      polyglot (>= 0.3.1)
+    tzinfo (0.3.37)
+    uglifier (2.0.1)
+      execjs (>= 0.3.0)
+      multi_json (~> 1.0, >= 1.0.2)
+    warden (1.2.1)
+      rack (>= 1.0)
+    what_methods (1.0.1)
+    wirble (0.1.3)
+
+PLATFORMS
+  ruby
+
+DEPENDENCIES
+  aasm
+  bootstrap-datepicker-rails!
+  bootstrap-sass (~> 2.1.0.0)
+  bundler
+  capistrano
+  carmen
+  coffee-rails (~> 3.2.0)
+  devise
+  figaro
+  font-awesome-sass-rails
+  formtastic
+  haml
+  jquery-rails
+  kaminari
+  libv8 (~> 3.11.8)
+  map_by_method
+  mysql2
+  paperclip
+  rails (~> 3.2.12)
+  rails_admin
+  rvm-capistrano
+  sass-rails (~> 3.2.0)
+  therubyracer
+  uglifier
+  what_methods
+  wirble

README.md

@@ -1,8 +1,8 @@
 REU Manager
 ==========
 
-This program facilitates the application process for science oriented NSF REU programs and is developed by the IT staff of the "UC San Diego Institute of Engineering in Medicine":https://iem.ucsd.edu/ .
+This program facilitates the application process for science oriented [NSF REU programs](http://www.nsf.gov/crssprgm/reu/) and is developed by the IT staff of the [UC San Diego Institute of Engineering in Medicine](https://iem.ucsd.edu/).
 
-"REU Manager":https://reumanager.com is built with "Ruby on Rails":http://rubyonrails.org/ and is completely free to host/maintain yourself.   You can see a demonstration of the site at: https://reumanager.com/demo .  You may login as the administrative user with the email *[email protected]* and password *DemoApp*.
+[REU Manager](https://reumanager.com) is built with [Ruby on Rails](http://rubyonrails.org/) and is completely free to host/maintain yourself.   You can see a demonstration of the site at: https://reumanager.com/demo .  You may login as the administrative user with the email [email protected] and the password DemoApp.
 
 Below are instructions for those who wish to install and maintain the application using their own equipment.

Rakefile

@@ -0,0 +1,7 @@
+#!/usr/bin/env rake
+# Add your own tasks in files placed in lib/tasks ending in .rake,
+# for example lib/tasks/capistrano.rake, and they will automatically be available to Rake.
+
+require File.expand_path('../config/application', __FILE__)
+
+Reuman::Application.load_tasks

app/assets/javascripts/application.js

@@ -0,0 +1,18 @@
+// This is a manifest file that'll be compiled into application.js, which will include all the files
+// listed below.
+//
+// Any JavaScript/Coffee file within this directory, lib/assets/javascripts, vendor/assets/javascripts,
+// or vendor/assets/javascripts of plugins, if any, can be referenced here using a relative path.
+//
+// It's not advisable to add code directly here, but if you do, it'll appear at the bottom of the
+// the compiled file.
+//
+// WARNING: THE FIRST BLANK LINE MARKS THE END OF WHAT'S TO BE PROCESSED, ANY BLANK LINE SHOULD
+// GO AFTER THE REQUIRES BELOW.
+//
+//= require jquery
+//= require jquery_ujs
+//= require bootstrap
+//= require bootstrap-datepicker
+//= require_tree .
+

app/assets/javascripts/recommendations.js.coffee

@@ -0,0 +1,3 @@
+# Place all the behaviors and hooks related to the matching controller here.
+# All this logic will automatically be available in application.js.
+# You can use CoffeeScript in this file: http://jashkenas.github.com/coffee-script/