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509ffa0
have made it python3 now have to figure out how to spilit the argumen…
SaberYoun6 May 22, 2020
4971d6e
add in my key this time as well updated to python3
SaberYoun6 May 22, 2020
48b290f
Add in a gitingore file
SaberYoun6 May 22, 2020
f95a692
When doing the changing of the file my space where a little messed up
SaberYoun6 May 22, 2020
4bca62f
now need to figure out how to make a this program a divide and conque…
SaberYoun6 May 23, 2020
61a1a04
adding into code to different function to test out there results
SaberYoun6 May 28, 2020
0fd6116
what did i ADD
SaberYoun6 May 28, 2020
2a93107
had to remove everything that i didn't want to return in the directory
SaberYoun6 May 28, 2020
e3d595c
The processing branch is taking to long
SaberYoun6 May 29, 2020
da57725
Threading is not the best the time was astromical time difference now…
SaberYoun6 May 31, 2020
e78c9ad
removed my timing set up and am now found that multiprocesssing is by…
SaberYoun6 May 31, 2020
fc15011
removed import time and the usage print statment had an extra stateme…
SaberYoun6 Jun 1, 2020
b57cf2f
did the table work this time
SaberYoun6 Jun 1, 2020
447b206
add heading to runtime in the readme file
SaberYoun6 Jun 1, 2020
1d041b5
changes to the readme file
SaberYoun6 Jun 1, 2020
5965bda
add my name to the read me file over the changes
SaberYoun6 Jun 1, 2020
51e3e2c
to reflect that chopseq will not run without python3 being called in …
SaberYoun6 Jun 1, 2020
054776b
we removed the ./ on the second one it wouldn't run otherwise
SaberYoun6 Jun 1, 2020
6c145e6
I Changed the gitignore to the proper name
SaberYoun6 Jun 1, 2020
b4f18f2
removed the threading pool executor
SaberYoun6 Jun 1, 2020
9877f19
Removed the reduanted dep. considering biopython installs numpy
SaberYoun6 Jun 1, 2020
57500d1
made another change to the readme forgot a 2
SaberYoun6 Jun 1, 2020
cdc13b7
forgot to git ride of the swap file in vim
SaberYoun6 Jun 1, 2020
bdd1f82
Add opt to be multithreading and muiltprocess defualt is set to be a …
SaberYoun6 Jun 3, 2020
2fb5b3b
realized that i didn't have enough enters
SaberYoun6 Jun 3, 2020
6b15dd5
add requirements.txt
SaberYoun6 Jun 3, 2020
c70086b
I went to the dependencies and the requirements and found that I had …
SaberYoun6 Jun 3, 2020
cdc13f4
got rid of the print statments at the top or in the middle of the aru…
SaberYoun6 Jun 3, 2020
a45cd69
I add in a line that would print out usage if the user tried to enter…
SaberYoun6 Jun 4, 2020
11b8ee2
add in direct path to try and speed up the process psutil
SaberYoun6 Jun 7, 2020
d554fdf
had to a misspelling of a word
SaberYoun6 Jun 7, 2020
6cbec33
I change getopt and the sys call to be the way they were getting impo…
SaberYoun6 Jun 7, 2020
a1ba8ec
I just made a direct import into threading and Processing
SaberYoun6 Jun 8, 2020
54c6e48
Found a logic error in my logic that would caused undue processoring …
SaberYoun6 Jun 8, 2020
4e42f5d
found the statement that is exited and add it a direct call with the …
SaberYoun6 Jun 8, 2020
15c5c8c
I made change to the Popen function to try and increase the speed and…
SaberYoun6 Jun 8, 2020
f92eb56
I changed math.floor into floor in hope of a speed up of less then a…
SaberYoun6 Jun 8, 2020
c103797
made all direct calls that I can in hopes to decrease the time next g…
SaberYoun6 Jun 8, 2020
8eeeb33
removed the timing for the program
SaberYoun6 Jun 8, 2020
735d883
fixed another logical error with thread and processors becuase now I …
SaberYoun6 Jun 13, 2020
7c3aa82
edited the Read me file with updates and then the heading
SaberYoun6 Jun 13, 2020
52c7655
add in single core and changed it to the best timeing for the core va…
SaberYoun6 Jun 13, 2020
45f975d
changed a few words around
SaberYoun6 Jun 13, 2020
18ad230
Did the final time trails for chopSEQ
SaberYoun6 Jun 15, 2020
59fc5d1
Did the made any error when puting time trail data into time trail it…
SaberYoun6 Jun 15, 2020
130ca20
##:##:## add a way to interrupt data
SaberYoun6 Jun 15, 2020
d8f59d6
Create SECURITY.md
SaberYoun6 Aug 19, 2020
b4d54b5
Merge pull request #1 from yuriprym/yuriprym-patch-1
SaberYoun6 Aug 19, 2020
9d172af
Create codeql-analysis.yml
SaberYoun6 Oct 10, 2020
86dc014
Merge pull request #2 from yuriprym/yuriprym-patch-2
SaberYoun6 Oct 10, 2020
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117 changes: 117 additions & 0 deletions .gitignore
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# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]
*$py.class

# C extensions
*.so

# Distribution / packaging
.Python
env/
build/
develop-eggs/
dist/
downloads/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
wheels/
*.egg-info/
.installed.cfg
*.egg

# PyInstaller
# Usually these files are written by a python script from a template
# before PyInstaller builds the exe, so as to inject date/other infos into it.
*.manifest
*.spec

# Installer logs
pip-log.txt
pip-delete-this-directory.txt

# Unit test / coverage reports
htmlcov/
.tox/
.coverage
.coverage.*
.cache
nosetests.xml
coverage.xml
*.cover
.hypothesis/

# Translations
*.mo
*.pot

# Django stuff:
*.log
local_settings.py

# Flask stuff:
instance/
.webassets-cache

# Scrapy stuff:
.scrapy

# Sphinx documentation
docs/_build/

# PyBuilder
target/

# Jupyter Notebook
.ipynb_checkpoints

# pyenv
.python-version

# celery beat schedule file
celerybeat-schedule

# SageMath parsed files
*.sage.py

# dotenv
.env

# virtualenv
.venv
venv/
ENV/

# Spyder project settings
.spyderproject
.spyproject

# Rope project settings
.ropeproject

# mkdocs documentation
/site

# mypy
.mypy_cache/

#swp
*.swp.py
*.swo.py
#fa
*.fa
#fasta
*.fasta
*.fastq

#csv file and excel
*.csv
*.xlsx
*.xls


2 changes: 2 additions & 0 deletions AUTHOR
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Umer Zeeshan Ijaz,
Young Sam Eugene,
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