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UW-Madison LOCI

Laboratory for Optical and Computational Instrumentation: the UW-Madison research lab of Kevin Eliceiri

34 followers
Madison, WI, USA
https://loci.wisc.edu
@UWMadisonLOCI

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curvelets curvelets Public

Curvelet-Transform based fibrillar collagen quantification (CurveAlign and CT-FIRE)

MATLAB 28 18
loci-scripts loci-scripts Public

Scripts and macros for LOCI scientific problems

Shell
visbio-imagej visbio-imagej Public

ImageJ plugins for 3D visualization using the VisAD toolkit

Java 1
misc-plugins misc-plugins Public

Miscellaneous ImageJ plugins

Java 2 1
search-image-sc search-image-sc Public

Image.sc search service

Python

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Showing 10 of 144 repositories

Flamingo_Control Public
Controlling a Flamingo microscope from Python

uw-loci/Flamingo_Control’s past year of commit activity

Python 2 MIT 2 0 0 Updated Jun 18, 2026
flamingo-stitcher Public
Standalone light-sheet tile stitching (CLI + GUI) for Flamingo T-SPIM data, extracted from py2flamingo.

uw-loci/flamingo-stitcher’s past year of commit activity

Python 0 GPL-3.0 0 0 0 Updated Jun 18, 2026
cellcast Public
A recast of cell segmentation models built on the Burn deep learning framework.

uw-loci/cellcast’s past year of commit activity

Rust 22 MIT 1 7 0 Updated Jun 17, 2026
multiscale Public
Modules for multiscale imaging at LOCI

uw-loci/multiscale’s past year of commit activity

Python 1 1 0 1 Updated Jun 17, 2026
ast-net Public
A deep learning network trained to classify bacterial species from label-free data.

uw-loci/ast-net’s past year of commit activity

0 Unlicense 0 0 0 Updated Jun 17, 2026
Kepco-Dashboard Public
A material-style Dashboard for control the Kepco. With waveform generation ability

uw-loci/Kepco-Dashboard’s past year of commit activity

Python 1 0 1 2 Updated Jun 17, 2026
EBEAM_dashboard Public
EBEAM System GUI

uw-loci/EBEAM_dashboard’s past year of commit activity

Python 7 1 19 (1 issue needs help) 16 Updated Jun 17, 2026
microscope_command_server Public
Socket-based command server for remote microscope control and QuPath integration

uw-loci/microscope_command_server’s past year of commit activity

Python 0 MIT 1 0 0 Updated Jun 17, 2026
microscope_configurations Public
YAML configuration templates for QPSC microscope systems

uw-loci/microscope_configurations’s past year of commit activity

Python 0 1 0 0 Updated Jun 17, 2026
kepco-actuator Public

uw-loci/kepco-actuator’s past year of commit activity

1 0 0 2 Updated Jun 16, 2026

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