[DO NOT MERGE] Jupyter scipy attempt for a public ECR image

src/jupyter-scipy/.devcontainer.json

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+{
+    "name": "JupyterLab with GATK 4.2.6.1-corretto-11",
+    "dockerComposeFile": "docker-compose.yaml",
+    "service": "app",
+    "shutdownAction": "none",
+    "workspaceFolder": "/workspace",
+    "postCreateCommand": [
+      "./startupscript/post-startup.sh",
+      "jupyter",
+      "/home/jupyter",
+      "${templateOption:cloud}",
+      "${templateOption:login}"
+    ],
+    // re-mount bucket files on container start up
+    "postStartCommand": [
+      "./startupscript/remount-on-restart.sh",
+      "jupyter",
+      "/home/jupyter",
+      "${templateOption:cloud}",
+      "${templateOption:login}"
+    ],
+    "remoteUser": "root",
+    "customizations": {
+      "workbench": {
+        "opens": {
+          "extensions": [
+            // Source
+            ".ipynb",
+            ".R",
+            ".py",
+            // Documents
+            ".md",
+            ".html",
+            ".latex",
+            ".pdf",
+            // Images
+            ".bmp",
+            ".gif",
+            ".jpeg",
+            ".jpg",
+            ".png",
+            ".svg",
+            // Data
+            ".csv",
+            ".tsv",
+            ".json",
+            ".vl"
+          ],
+          "fileUrlSuffix": "/lab/tree/{path}",
+          "folderUrlSuffix": "/lab/tree/{path}"
+        }
+      }
+    }
+  }

src/jupyter-scipy/devcontainer-template.json

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+{
+    "id": "jupyter-gatk-template",
+    "description": "A template used to serve the Workbench JupyterLab container image with GATK installed",
+    "version": "0.0.1",
+    "name": "Workbench JupyterLab GATK template",
+    "documentationURL": "https://github.com/verily-src/workbench-app-devcontainers/tree/master/src/jupyter-gatk-aws",
+    "licenseURL": "https://github.com/verily-src/workbench-app-devcontainers/blob/master/LICENSE",
+    "options": {
+      "cloud": {
+        "type": "string",
+        "description": "VM cloud environment",
+        "proposals": ["gcp", "aws"],
+        "default": "gcp"
+      },
+      "login": {
+        "type": "string",
+        "description": "Whether to log in to workbench CLI",
+        "proposals": ["true", "false"],
+        "default": "false"
+      },
+      "containerImage": {
+        "type": "string",
+        "description": "The container image to use",
+        "default": "public.ecr.aws/j1r0q0g6/notebooks/notebook-servers/jupyter-scipy:v1.5.0"
+      },
+      "containerPort": {
+        "type": "number",
+        "description": "The port to expose the container on",
+        "default": 8888
+      }
+    },
+    "platforms": ["Any"]
+  }

src/jupyter-scipy/docker-compose.yaml

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+version: "2.4"
+services:
+  app:
+    container_name: "application-server"
+    image: "public.ecr.aws/j1r0q0g6/notebooks/notebook-servers/jupyter-scipy:v1.5.0"
+    user: "jupyter"
+    restart: always
+    volumes:
+      - .:/workspace:cached
+    ports:
+      - "8888:8888"
+    networks:
+      - app-network
+    cap_add:
+      - SYS_ADMIN
+    devices:
+      - /dev/fuse
+    security_opt:
+      - apparmor:unconfined
+networks:
+  app-network:
+    external: true