Plants summer2024

DataCleaningScripts/clean_plant_quadrat_data.R

@@ -26,9 +26,9 @@ source('DataCleaningScripts/plant_data_cleaning_functions.R')
 # 1. Load Excel file #
 ######################
 
-season <-  'Winter'
+season <-  'Summer'
 year <-  '2024'
-filepath <-  'D:\\Dropbox\\Portal\\PORTAL_primary_data\\Plant\\Quadrats\\Dataraw\\Newdata\\'
+filepath <-  'C:\\Users\\lindseybell\\UFL Dropbox\\Lindsey Bell\\Portal\\PORTAL_primary_data\\Plant\\Quadrats\\Dataraw\\Newdata\\'
 
 newfile <-  paste(filepath, season, year, '.xlsx', sep='')
 
@@ -52,7 +52,7 @@ ws1[unmatched[i, 'row'] -1 , ]
 ws2[unmatched[i, 'row'] - 1, ]
 
 # Save matching datasheet
-savepath = paste0('D:\\Dropbox\\Portal\\PORTAL_primary_data\\Plant\\Quadrats\\Dataraw\\Newdata\\', season, year, '_matched.csv')
+savepath = paste0('C:\\Users\\lindseybell\\UFL Dropbox\\Lindsey Bell\\Portal\\PORTAL_primary_data\\Plant\\Quadrats\\Dataraw\\Newdata\\', season, year, '_matched.csv')
 write.csv(ws1, savepath, row.names = FALSE)
 
 ######################

DataCleaningScripts/clean_shrub_transect_data.R

@@ -26,8 +26,8 @@ source('DataCleaningScripts/plant_data_cleaning_functions.R')
 # 1. Load Excel file #
 ######################
 season <-  'Summer'
-year <-  '2023'
-filepath <-  'D:\\Dropbox\\Portal\\PORTAL_primary_data\\Plant\\TRANSECTS\\ShrubTransects(2015-present)\\RawData\\'
+year <-  '2024'
+filepath <-  'C:\\Users\\lindseybell\\UFL Dropbox\\Lindsey Bell\\Portal\\PORTAL_primary_data\\Plant\\TRANSECTS\\Data_Raw\\RawData\\'
 
 excel_file <-  paste(filepath, "ShrubTransect_", season, year, '.xlsx', sep='')
 

Plants/Portal_plant_census_dates.csv

@@ -82,3 +82,4 @@ year,season,censusdone,start_month,start_day,end_month,end_day
 2023,winter,yes,3,21,3,23
 2023,summer,yes,9,12,9,13
 2024,winter,yes,4,3,4,3
+2024,summer,yes,8,30,9,3

Plants/Portal_plant_quadrats.csv

@@ -118451,3 +118451,259 @@ year,season,plot,quadrat,species,abundance,cover,cf,notes
 2024,"winter",20,37,"erod cicu",1,0.1,,
 2024,"winter",20,57,"erod cicu",5,6,,
 2024,"winter",20,57,"rume hyme",1,1,,
+2024,"summer",1,11,"alli inca",2,0.1,,
+2024,"summer",1,15,"tali aura",2,0.1,,
+2024,"summer",1,17,"acac cons",1,3,,
+2024,"summer",1,17,"erag lehm",1,3,,
+2024,"summer",1,37,"ephe trif",1,7,,
+2024,"summer",1,35,"chen frem",7,15,,
+2024,"summer",1,33,"chen frem",1,1,,
+2024,"summer",1,31,"erag lehm",1,1,,
+2024,"summer",1,51,"chen frem",1,0.1,,
+2024,"summer",1,77,"erio aber",1,2,,
+2024,"summer",1,77,"erag lehm",1,1,,
+2024,"summer",1,75,"acac cons",1,60,,
+2024,"summer",1,73,"erio aber",1,1,,
+2024,"summer",1,71,"alli inca",1,0.1,,
+2024,"summer",1,71,"tali aura",2,2,,
+2024,"summer",1,71,"erio aber",1,0.1,,
+2024,"summer",1,71,"ephe trif",1,5,,
+2024,"summer",2,71,"chen frem",1,2,,
+2024,"summer",2,73,"muhl port",1,5,,
+2024,"summer",2,75,"erag lehm",2,3,,
+2024,"summer",2,77,"erag lehm",1,2,,
+2024,"summer",2,53,"erag lehm",1,0.1,,
+2024,"summer",2,51,"erag lehm",2,3,,
+2024,"summer",2,51,"guti saro",1,6,,
+2024,"summer",2,51,"erio aber",1,0.1,,
+2024,"summer",2,51,"chen frem",1,0.1,,
+2024,"summer",2,11,"hapl tenu",3,25,,
+2024,"summer",2,11,"erag lehm",2,2,,
+2024,"summer",2,15,"chen frem",3,10,,
+2024,"summer",2,15,"sola elea",1,1,,
+2024,"summer",2,17,"erag lehm",1,5,,
+2024,"summer",3,31,"acac cons",1,40,,
+2024,"summer",3,31,"erag lehm",1,1,,
+2024,"summer",3,33,"chen frem",5,3,,
+2024,"summer",3,33,"erag lehm",1,2,,
+2024,"summer",3,33,"tali aura",2,1,,
+2024,"summer",3,35,"chen frem",2,1,,
+2024,"summer",3,37,"tali aura",1,0.1,,
+2024,"summer",4,73,"chen frem",2,0.1,,
+2024,"summer",4,75,"erag lehm",1,2,,
+2024,"summer",4,75,"chen frem",1,3,,
+2024,"summer",4,77,"chen frem",1,1,,
+2024,"summer",4,35,"chen frem",3,3,,
+2024,"summer",4,33,"chen frem",4,1,,
+2024,"summer",4,31,"erag lehm",1,1,,
+2024,"summer",5,55,"zinn pumi",1,2,,
+2024,"summer",5,55,"muhl port",1,3,,
+2024,"summer",5,53,"chen frem",1,1,,
+2024,"summer",5,51,"chen frem",2,1,,
+2024,"summer",5,51,"sola elea",1,0.1,,
+2024,"summer",6,73,"tali aura",1,0.1,,
+2024,"summer",6,77,"acac cons",2,50,,
+2024,"summer",6,57,"acac cons",1,15,,
+2024,"summer",6,55,"chen frem",2,30,,
+2024,"summer",6,53,"acac cons",1,10,,
+2024,"summer",6,51,"acac cons",1,15,,
+2024,"summer",7,53,"chen frem",4,1,,
+2024,"summer",7,55,"acac cons",1,25,,
+2024,"summer",7,55,"chen frem",1,3,,
+2024,"summer",7,57,"chen frem",1,5,,
+2024,"summer",8,71,"chen frem",4,3,,
+2024,"summer",8,73,"chen frem",1,0.1,,
+2024,"summer",8,75,"chen frem",1,0.1,,
+2024,"summer",8,77,"sola elea",5,2,,
+2024,"summer",8,37,"tali aura",1,1,,
+2024,"summer",8,35,"chen frem",8,6,,
+2024,"summer",8,35,"acac cons",1,35,,
+2024,"summer",8,33,"chen frem",11,1,,
+2024,"summer",9,57,"sola elea",1,0.1,,
+2024,"summer",9,57,"acac cons",1,3,,
+2024,"summer",9,57,"erag lehm",1,5,,
+2024,"summer",9,53,"erag lehm",6,25,,
+2024,"summer",9,51,"erag lehm",1,10,,
+2024,"summer",10,51,"dale brac",1,0.1,,
+2024,"summer",10,51,"tali aura",1,1,,
+2024,"summer",10,53,"tali aura",2,1,,
+2024,"summer",10,55,"tali aura",1,1,,
+2024,"summer",10,17,"tali aura",1,0.1,,
+2024,"summer",11,15,"acac cons",1,20,,
+2024,"summer",11,15,"chen frem",1,1,,
+2024,"summer",11,15,"guti saro",1,8,,
+2024,"summer",11,75,"acac cons",1,25,,
+2024,"summer",12,11,"guti saro",1,25,,
+2024,"summer",13,17,"acac cons",1,60,,
+2024,"summer",13,15,"tali aura",1,0.1,,
+2024,"summer",13,11,"acac cons",1,1,,
+2024,"summer",13,31,"euro lana",1,45,,
+2024,"summer",13,33,"acac cons",1,25,,
+2024,"summer",13,33,"tali aura",1,0.1,,
+2024,"summer",13,35,"chen frem",1,10,,
+2024,"summer",14,13,"sola elea",1,0.1,,
+2024,"summer",14,15,"acac cons",3,20,,
+2024,"summer",14,17,"acac cons",1,50,,
+2024,"summer",14,17,"tali aura",1,1,,
+2024,"summer",15,13,"muhl port",3,13,,
+2024,"summer",15,17,"tali aura",1,2,,
+2024,"summer",15,17,"acac cons",1,20,,
+2024,"summer",15,17,"muhl port",1,10,,
+2024,"summer",15,17,"guti saro",1,8,,
+2024,"summer",16,13,"acac cons",1,10,,
+2024,"summer",16,17,"chen frem",1,1,,
+2024,"summer",16,35,"tali aura",1,0.1,,
+2024,"summer",17,15,"erag lehm",1,2,,
+2024,"summer",17,17,"sola elea",1,0.1,,
+2024,"summer",17,37,"sola elea",6,4,,
+2024,"summer",17,37,"tali aura",1,0.1,,
+2024,"summer",17,33,"acac cons",1,3,,
+2024,"summer",18,15,"acac cons",1,60,,
+2024,"summer",18,17,"acac cons",2,10,,
+2024,"summer",18,37,"tali aura",1,1,,
+2024,"summer",18,33,"acac cons",1,4,,
+2024,"summer",20,17,"acac cons",1,7,,
+2024,"summer",20,15,"tali aura",1,0.1,,
+2024,"summer",20,55,"tali aura",1,0.1,,
+2024,"summer",21,15,"tali aura",1,0.1,,
+2024,"summer",21,17,"guti saro",2,12,,
+2024,"summer",21,17,"tali aura",2,1,,
+2024,"summer",21,17,"erio lemm",1,2,,
+2024,"summer",22,53,"tali aura",1,2,,
+2024,"summer",22,75,"tali aura",6,2,,
+2024,"summer",22,71,"erag lehm",4,6,,
+2024,"summer",22,71,"tali aura",2,4,,
+2024,"summer",22,31,"tali aura",1,0.1,,
+2024,"summer",23,77,"tali aura",1,0.1,,
+2024,"summer",23,11,"tali aura",1,1,,
+2024,"summer",23,13,"acac cons",1,3,,
+2024,"summer",23,15,"tali aura",1,1,,
+2024,"summer",23,17,"flou cern",1,5,,
+2024,"summer",19,55,"sola elea",3,2,,
+2024,"summer",19,53,"tali aura",1,1,,
+2024,"summer",19,13,"tali aura",1,0.1,,
+2024,"summer",2,35,"tali aura",2,5,,
+2024,"summer",2,35,"chen frem",6,7,,
+2024,"summer",3,11,"tali aura",1,4,,
+2024,"summer",3,15,"chen frem",1,1,,
+2024,"summer",3,15,"tali aura",1,0.1,,
+2024,"summer",3,17,"chen frem",3,0.1,,
+2024,"summer",3,57,"chen frem",2,0.1,,
+2024,"summer",3,57,"tali aura",1,0.1,,
+2024,"summer",3,55,"chen frem",3,5,,
+2024,"summer",3,53,"tali aura",2,0.1,,
+2024,"summer",3,53,"chen frem",1,1,,
+2024,"summer",3,51,"tali aura",1,4,,
+2024,"summer",3,51,"erio aber",1,0.1,,
+2024,"summer",3,71,"chen frem",1,0.1,,
+2024,"summer",3,73,"tali aura",2,1,,
+2024,"summer",3,73,"chen frem",4,3,,
+2024,"summer",3,77,"tali aura",1,0.1,,
+2024,"summer",3,77,"chen frem",2,0.1,,
+2024,"summer",4,51,"chen frem",1,1,,
+2024,"summer",4,55,"erag lehm",1,1,,
+2024,"summer",4,57,"chen frem",2,7,,
+2024,"summer",4,15,"chen frem",1,5,,
+2024,"summer",4,11,"chen frem",1,2,,
+2024,"summer",4,11,"sola elea",1,0.1,,
+2024,"summer",5,13,"erag lehm",1,3,,
+2024,"summer",5,35,"sola elea",2,2,,
+2024,"summer",5,31,"guti saro",1,30,,
+2024,"summer",6,11,"sola elea",1,0.1,,
+2024,"summer",6,11,"chen frem",1,2,,
+2024,"summer",6,15,"acac cons",1,25,,
+2024,"summer",6,15,"sola elea",1,0.1,,
+2024,"summer",6,17,"acac cons",1,50,,
+2024,"summer",6,33,"sola elea",1,0.1,,
+2024,"summer",6,31,"chen frem",1,5,,
+2024,"summer",7,37,"sola elea",2,5,,
+2024,"summer",7,35,"chen frem",1,3,,
+2024,"summer",7,31,"acac cons",1,20,,
+2024,"summer",7,31,"chen frem",1,0.1,,
+2024,"summer",7,71,"chen frem",1,3,,
+2024,"summer",7,73,"acac cons",1,25,,
+2024,"summer",7,73,"chen frem",1,0.1,,
+2024,"summer",7,77,"erag lehm",3,3,,
+2024,"summer",8,51,"muhl port",1,0.1,,
+2024,"summer",8,51,"chen frem",2,1,,
+2024,"summer",8,53,"tali aura",1,1,,
+2024,"summer",8,55,"acac cons",1,30,,
+2024,"summer",8,57,"sola elea",1,1,,
+2024,"summer",8,17,"muhl port",2,15,,
+2024,"summer",8,17,"acac cons",1,10,,
+2024,"summer",8,15,"sola elea",1,1,,
+2024,"summer",8,13,"chen frem",1,3,,
+2024,"summer",9,13,"pros glan",1,60,,
+2024,"summer",9,13,"chen frem",1,1,,
+2024,"summer",9,15,"chen frem",1,5,,
+2024,"summer",9,15,"acac cons",1,18,,
+2024,"summer",9,37,"acac cons",1,7,,
+2024,"summer",9,35,"guti saro",1,8,,
+2024,"summer",9,31,"acac cons",1,12,,
+2024,"summer",10,71,"chen frem",1,1,,
+2024,"summer",10,73,"sola elea",1,0.1,,
+2024,"summer",10,73,"erag lehm",1,0.1,,
+2024,"summer",10,75,"tali aura",1,0.1,,
+2024,"summer",10,75,"chen frem",1,0.1,,
+2024,"summer",10,77,"tali aura",1,5,,
+2024,"summer",10,37,"tali aura",1,0.1,,
+2024,"summer",10,35,"tali aura",2,1,,
+2024,"summer",10,33,"tali aura",2,1,,
+2024,"summer",10,31,"tali aura",1,0.1,,
+2024,"summer",10,11,"chen frem",1,0.1,,
+2024,"summer",10,11,"acac cons",1,7,,
+2024,"summer",10,13,"tali aura",7,0.1,,
+2024,"summer",11,55,"muhl port",1,0.1,,
+2024,"summer",11,55,"acac cons",1,7,,
+2024,"summer",12,73,"acac cons",3,17,,
+2024,"summer",12,77,"muhl port",1,45,,
+2024,"summer",12,77,"erag lehm",33,5,,
+2024,"summer",12,77,"tali aura",2,0.1,,
+2024,"summer",12,77,"amar palm",15,0.1,,
+2024,"summer",12,77,"kall hirs",2,0.1,,
+2024,"summer",12,57,"sola elea",1,0.1,,
+2024,"summer",12,57,"tali aura",1,0.1,,
+2024,"summer",13,55,"chen frem",2,7,,
+2024,"summer",13,77,"guti saro",1,25,,
+2024,"summer",13,77,"acac cons",2,40,,
+2024,"summer",14,77,"yucc elat",1,65,,
+2024,"summer",14,53,"acac cons",1,30,,
+2024,"summer",14,51,"sola elea",1,0.1,,
+2024,"summer",15,71,"chen frem",1,4,,
+2024,"summer",15,73,"tali aura",1,0.1,,
+2024,"summer",15,51,"acac cons",1,5,,
+2024,"summer",16,77,"acac cons",1,80,,
+2024,"summer",18,77,"acac cons",1,3,,
+2024,"summer",18,55,"tali aura",1,0.1,,
+2024,"summer",18,51,"erag lehm",1,2,,
+2024,"summer",18,51,"tali aura",1,0.1,,
+2024,"summer",20,37,"tali aura",1,3,,
+2024,"summer",20,33,"tali aura",1,,,
+2024,"summer",20,31,"acac cons",6,,,
+2024,"summer",20,31,"tali aura",1,0.1,,
+2024,"summer",20,77,"tali aura",1,0.1,,
+2024,"summer",21,73,"chen frem",3,10,,
+2024,"summer",21,73,"sola elea",1,0.1,,
+2024,"summer",21,57,"tali aura",1,0.1,,
+2024,"summer",21,55,"tali aura",1,0.1,,
+2024,"summer",21,51,"erag lehm",1,2,,
+2024,"summer",21,51,"tali aura",2,0.1,,
+2024,"summer",21,31,"tali aura",1,0.1,,
+2024,"summer",21,37,"acac cons",1,25,,
+2024,"summer",22,13,"tali aura",1,0.1,,
+2024,"summer",22,15,"tali aura",1,1,,
+2024,"summer",22,17,"tali aura",1,0.1,,
+2024,"summer",22,33,"tali aura",2,0.1,,
+2024,"summer",23,51,"muhl port",2,30,,
+2024,"summer",23,51,"pros glan",1,85,,
+2024,"summer",23,57,"tali aura",1,0.1,,
+2024,"summer",23,57,"guti saro",1,1,,
+2024,"summer",19,73,"sola elea",1,0.1,,
+2024,"summer",19,35,"muhl port",1,0.1,,
+2024,"summer",19,35,"tali aura",1,5,,
+2024,"summer",19,37,"tali aura",1,0.1,,
+2024,"summer",24,57,"tali aura",2,0.1,,
+2024,"summer",24,57,"sola elea",1,0.1,,
+2024,"summer",24,55,"acac cons",1,3,,
+2024,"summer",24,53,"acac cons",1,35,,
+2024,"summer",24,53,"dich pulc",1,0.1,,