Releases: yingyue2030699/Reaction-System-Solver
Releases · yingyue2030699/Reaction-System-Solver
Reaction System Solver
First release of reaction system solver consisting of 3 modules:
- a string parser that converts a list of reaction strings into reactant and product stoichiometry matrices.
- a ODE solver that imports the stoichiometry matrices to generate
dydtfunction that can be solved with provided functions (usingscipy) or externally. - a Gillespie algorithm supporting full and optimized updating scheme that imports the stoichiometry matrices, generating
copy numbers vs timetrajectories.