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Releases: yingyue2030699/Reaction-System-Solver

Reaction System Solver

10 Jan 20:03

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First release of reaction system solver consisting of 3 modules:

  • a string parser that converts a list of reaction strings into reactant and product stoichiometry matrices.
  • a ODE solver that imports the stoichiometry matrices to generate dydt function that can be solved with provided functions (using scipy) or externally.
  • a Gillespie algorithm supporting full and optimized updating scheme that imports the stoichiometry matrices, generating copy numbers vs timetrajectories.