0.8.10

docs/conf.py

@@ -61,9 +61,9 @@
 # built documents.
 #
 # The short X.Y version.
-version = '0.8.9'
+version = '0.8.10'
 # The full version, including alpha/beta/rc tags.
-release = '0.8.9'
+release = '0.8.10'
 
 # The language for content autogenerated by Sphinx. Refer to documentation
 # for a list of supported languages.

gseapy/__init__.py

@@ -3,4 +3,4 @@
 from .enrichr import enrichr
 from .parser import get_library_name
 
-__version__='0.8.9'
+__version__='0.8.10'

gseapy/__main__.py

@@ -11,7 +11,7 @@
 # or args = argparser.parse_args() will throw bugs!!!
 
 
-__version__ = '0.8.9'
+__version__ = '0.8.10'
 
 def main():
     """The Main function/pipeline for GSEAPY."""

gseapy/plot.py

@@ -127,6 +127,8 @@ def gsea_plot(rank_metric, enrich_term, hit_ind, nes, pval, fdr, RES,
     fdr_label = 'FDR: '+ "{:.3f}".format(float(fdr))
     im_matrix = rank_metric.ix[:,1:].T
 
+    #output truetype
+    plt.rcParams.update({'pdf.fonttype':42,'ps.fonttype':42})
     #in most case, we will have mangy plots, so do not display plots
     #It's also convinient to run this script on command line.
 
@@ -139,8 +141,8 @@ def gsea_plot(rank_metric, enrich_term, hit_ind, nes, pval, fdr, RES,
     ax1 =  fig.add_subplot(gs[11:])
     if module == 'ssgsea':
         nes_label = 'ES: '+ "{:.3f}".format(float(nes))
-        #pval_label=''
-        #fdr_label=''
+        pval_label='Pval: '
+        fdr_label='FDR: '
         ax1.fill_between(x, y1= np.log(rank_metric['rank']), y2=0, color='#C9D3DB')
         ax1.set_ylabel("log ranked metric", fontsize=14)
     else:

setup.py

@@ -5,7 +5,7 @@
 
 
 
-__version__='0.8.9'
+__version__='0.8.10'
 
 if sys.argv[-1] == 'publish':
     os.system("python setup.py sdist bdist_wheel register upload")