gseapy-v0.8.1

GSEApy-0.8.1: An evolved version

New Features:

• Add new Single Sample GSEA function to gseapy. Either Use it in command line or interactive python console. Please see documentations for more details
• Parallel Computing support for GSEApy. Now, you could use -p parameter to specify cpu numbers you would like to use.
• The time cost for phenotypepermutation (in gsea procedure) is much decreased.
• The source code for GSEApy has been re-build and re-designed. It become more extendable and easier to maintain

API changes:

• call module have been renamed to gsea for better usage, previous call() is been deprecated, and you should use gsea() instead.
• The option -p for permutation_type has changed to -t. -p is used to specify processor number now.
  see details in documents.

Bugs fixes

• fixed some minor bugs when using Enrichr and Replot module
• fixed a potential bug in preprocessing step(in gsea mode, prerank or ssgsea is not affected). GSEApy filtered out genes when standard deviation of samples equal to zero.
• fixed column and row orders in gsea heatmap output.
• optimized the report output and naming rules.