claireyung:dev-MC_4km_jra_ryf+regionalpanan+isf. PR #2

CITATION.cff

@@ -102,6 +102,34 @@ authors:
     family-names: Yang
     email: Luwei.Yang@anu.edu.au
     affiliation: Research School of Earth Sciences, Australian National University
+  - given-names: Claire
+    family-names: Yung
+    email: Claire.Yung@anu.edu.au
+    affiliation: Research School of Earth Sciences, Australian National University
+    orcid: 'https://orcid.org/0000-0002-0052-7668'
+  - given-names: Wilton
+    family-names: Aguiar
+    email: wilton.aguiar@anu.edu.au
+    affiliation: Research School of Earth Sciences, Australian National University
+    orcid: 'https://orcid.org/0000-0003-2453-9791'
+  - given-names: Helen
+    family-names: Macdonald
+    email: helen.macdonald@anu.edu.au
+    affiliation: ACCESS-NRI
+    orcid: 'https://orcid.org/0000-0003-4734-3150'
+  - given-names: Edward
+    family-names: Yang
+    email: edward.yang@anu.edu.au
+    affiliation: ACCESS-NRI
+  - given-names: David
+    family-names: Gwyther
+    email: d.gwyther@uq.edu.au
+    affiliation: School of the Environment, University of Queensland
+    orcid: 'https://orcid.org/0000-0002-7218-2785'
+  - given-names: Fabio
+    family-names: Boeira Dias
+    email: f.boeira_dias@unsw.edu.au
+    orcid: 'https://orcid.org/0000-0002-2965-2120'
 identifiers:
   - description: "The concept DOI of all ACCESS-OM3 configurations."
     type: doi

README.md

@@ -1,3 +1,7 @@
+## MOM6-CICE6 4km JRA55-do RYF regional pan-Antarctic ACCESS-OM3 configuration with ice shelf cavities
+
+**WARNING: This configuration is still under development and should not be used for production.**
+
 See [`main` branch
 README](https://github.com/ACCESS-NRI/access-om3-configs/blob/main/README.md) for usage
 information.

config.yaml

@@ -2,9 +2,9 @@
 
 # If submitting to a different project to your default, uncomment line below 
 # and change project code as appropriate; also set shortpath below
-# project: x77
+# project: e14
 # Force payu to always find, and save, files in this scratch project directory
-# shortpath: /scratch/v45
+# shortpath: /scratch/x77
 
 # Using payu sync is recommend to copy data from ephemeral scratch space to 
 # longer term storage
@@ -18,35 +18,41 @@ sync:
 modules:
     use:
         - /g/data/vk83/modules
+        - /g/data/vk83/prerelease/modules
     load:
-        - access-om3/2025.08.001
-        - model-tools/mppnccombine-fast
+        - access-om3/pr142-36
+        - model-tools/mppnccombine-fast/2025.07.000
 
 queue: normalsr
-ncpus: 1976
+ncpus: 2990
 jobfs: 10GB
-mem: 9500GB
-walltime: 6:00:00
-jobname: 25km_jra_ryf
+mem: 14700GB
+walltime: 4:00:00
+jobname: 4km_panAn_om3_isf
 
 model: access-om3
 exe: access-om3-MOM6-CICE6
 input:
-    - /g/data/vk83/configurations/inputs/access-om3/cice/grids/global.25km/2025.11.27/kmt.nc
-    - /g/data/vk83/configurations/inputs/access-om3/mom/grids/mosaic/global.25km/2025.09.02/ocean_hgrid.nc
-    - /g/data/vk83/configurations/inputs/access-om3/mom/grids/vertical/global.25km/2025.03.12/ocean_vgrid.nc
-    - /g/data/vk83/configurations/inputs/access-om3/mom/initial_conditions/global.25km/2025.10.24/woa23_ts_01_mom.nc
-    - /g/data/vk83/configurations/inputs/access-om3/mom/surface_salt_restoring/global.25km/2025.10.24/salt_sfc_restore.nc
-    - /g/data/vk83/configurations/inputs/access-om3/mom/tidal_external_files/global.25km/2025.09.03/bottom_roughness.nc
-    - /g/data/vk83/configurations/inputs/access-om3/mom/tidal_external_files/global.25km/2025.09.03/tideamp.nc
-    - /g/data/vk83/configurations/inputs/access-om3/share/grids/global.25km/2025.11.27/topog.nc
-    - /g/data/vk83/configurations/inputs/access-om3/mom/chlorophyll/global.25km/2025.11.21/chl_globcolour_monthly_clim.nc
-    - /g/data/vk83/configurations/inputs/access-om3/share/meshes/global.25km/2025.11.27/access-om3-25km-ESMFmesh.nc
-    - /g/data/vk83/configurations/inputs/access-om3/share/meshes/global.25km/2025.11.27/access-om3-25km-nomask-ESMFmesh.nc
+    - /g/data/vk83/prerelease/configurations/inputs/access-om3/panan-isf.4km/2026.01.08/kmt.nc
+    - /g/data/vk83/prerelease/configurations/inputs/access-om3/panan.4km/2026.01.08/ocean_hgrid.nc
+    - /g/data/vk83/prerelease/configurations/inputs/access-om3/panan.4km/2026.01.08/ocean_vgrid.nc
+    - /g/data/vk83/prerelease/configurations/inputs/access-om3/panan-isf.4km/2026.01.08/ocean_temp_salt.res.nc
+    - /g/data/vk83/prerelease/configurations/inputs/access-om3/panan.4km/2026.01.08/salt_sfc_restore.nc
+    - /g/data/vk83/prerelease/configurations/inputs/access-om3/panan-isf.4km/2026.01.08/salt_restore_mask.nc
+    - /g/data/vk83/prerelease/configurations/inputs/access-om3/panan-isf.4km/2026.01.08/bottom_roughness.nc
+    - /g/data/vk83/prerelease/configurations/inputs/access-om3/panan-isf.4km/2026.01.08/tideamp.nc
+    - /g/data/vk83/prerelease/configurations/inputs/access-om3/panan-isf.4km/2026.01.08/topog_seaice.nc
+    - /g/data/vk83/prerelease/configurations/inputs/access-om3/panan-isf.4km/2026.01.08/topog.nc
+    - /g/data/vk83/prerelease/configurations/inputs/access-om3/panan-isf.4km/2026.01.08/access-om3-4km-ESMFmesh.nc
+    - /g/data/vk83/prerelease/configurations/inputs/access-om3/panan-isf.4km/2026.01.08/access-om3-4km-nomask-ESMFmesh.nc
     - /g/data/vk83/prerelease/configurations/inputs/access-om3/share/meshes/share/2026.01.21/JRA55do-datm-ESMFmesh.nc
     - /g/data/vk83/prerelease/configurations/inputs/access-om3/share/meshes/share/2026.01.21/JRA55do-drof-ESMFmesh.nc
-    - /g/data/vk83/configurations/inputs/access-om3/cmeps/remap_weights/global.25km/2025.11.27/access-om3-25km-rof-remap-weights.nc
+    - /g/data/vk83/prerelease/configurations/inputs/access-om3/panan-isf.4km/2026.01.08/access-om3-4km-rof-remap-weights.nc
     - /g/data/vk83/configurations/inputs/JRA-55/RYF/v1-6/data
+    - /g/data/vk83/prerelease/configurations/inputs/access-om3/panan.4km/2026.01.08/OBC37S_forcing_access_yr2_4km.nc
+    - /g/data/vk83/prerelease/configurations/inputs/access-om3/panan.4km/2026.01.08/diag_rho2.nc
+    - /g/data/vk83/prerelease/configurations/inputs/access-om3/panan-isf.4km/2026.01.08/ice_shelf_thick.nc
+    - /g/data/vk83/prerelease/configurations/inputs/access-om3/panan-isf.4km/2026.01.08/mask_table.1490.84x49
 
 runlog: true
 metadata: 
@@ -63,9 +69,9 @@ platform:
 collate:
   restart: true
   mpi: true
-  walltime: 4:00:00
-  mem: 30GB
-  ncpus: 4
+  walltime: 1:00:00
+  mem: 80GB
+  ncpus: 16
   queue: normalsr
   exe: mppnccombine-fast
 
@@ -76,5 +82,5 @@ postscript: -v PROJECT,SCRIPTS_DIR=/g/data/vk83/apps/om3-scripts -lstorage=${PBS
 
 qsub_flags: -W umask=027
 
-restart_freq: 1YS
+restart_freq: 1
 payu_minimum_version: 1.2.0

datm.streams.xml

@@ -67,7 +67,7 @@
   </stream_info>
   <stream_info name="JRA55do.SWDN">
     <taxmode>cycle</taxmode>
-    <dtlimit>1.0</dtlimit>
+    <dtlimit>2</dtlimit>
     <readmode>single</readmode>
     <mapalgo>bilinear</mapalgo>
     <year_first>1900</year_first>

datm_in

@@ -8,10 +8,10 @@
   flds_preso3 = .false.
   flds_wiso = .false.
   iradsw = 1
-  model_maskfile = "./INPUT/access-om3-25km-nomask-ESMFmesh.nc"
-  model_meshfile = "./INPUT/access-om3-25km-nomask-ESMFmesh.nc"
-  nx_global = 1440
-  ny_global = 1152
+  model_maskfile = "./INPUT/access-om3-4km-nomask-ESMFmesh.nc"
+  model_meshfile = "./INPUT/access-om3-4km-nomask-ESMFmesh.nc"
+  nx_global = 4320
+  ny_global = 1442
   restfilm = "null"
   skip_restart_read = .false.
 /