Panan updates

MOM_input

@@ -91,7 +91,7 @@ GRID_CONFIG = "mosaic"          !
                                 !     cartesian - use a (flat) Cartesian grid.
                                 !     spherical - use a simple spherical grid.
                                 !     mercator - use a Mercator spherical grid.
-GRID_FILE = "ocean_hgrid_cropped.nc" !
+GRID_FILE = "ocean_hgrid.nc"    !
                                 ! Name of the file from which to read horizontal grid data.
 RAD_EARTH = 6.371229E+06        !   [m] default = 6.378E+06
                                 ! The radius of the Earth.
@@ -122,8 +122,6 @@ TOPO_CONFIG = "file"            !
                                 !     Phillips - ACC-like idealized topography used in the Phillips config.
                                 !     dense - Denmark Strait-like dense water formation and overflow.
                                 !     USER - call a user modified routine.
-TOPO_FILE = "topog_Charrassin_nocavity_cropped.nc" ! default = "topog.nc"
-                                ! The file from which the bathymetry is read.
 MAXIMUM_DEPTH = 6000.0          !   [m]
                                 ! The maximum depth of the ocean.
 
@@ -198,7 +196,7 @@ REGRIDDING_COORDINATE_MODE = "ZSTAR" ! default = "LAYER"
                                 !  HYCOM1 - HyCOM-like hybrid coordinate
                                 !  HYBGEN - Hybrid coordinate from the Hycom hybgen code
                                 !  ADAPTIVE - optimize for smooth neutral density surfaces
-ALE_COORDINATE_CONFIG = "FILE:ocean_vgrid_cropped.nc,interfaces=zeta" ! default = "UNIFORM"
+ALE_COORDINATE_CONFIG = "FILE:ocean_vgrid.nc,interfaces=zeta" ! default = "UNIFORM"
                                 ! Determines how to specify the coordinate resolution. Valid options are:
                                 !  PARAM       - use the vector-parameter ALE_RESOLUTION
                                 !  UNIFORM[:N] - uniformly distributed
@@ -239,7 +237,7 @@ INIT_LAYERS_FROM_Z_FILE = True  !   [Boolean] default = False
                                 ! Z-space file on a latitude-longitude grid.
 
 ! === module MOM_initialize_layers_from_Z ===
-TEMP_SALT_Z_INIT_FILE = "ACCESS-OM2_IC_bfilled_smoothedland.nc" ! default = "temp_salt_z.nc"
+TEMP_SALT_Z_INIT_FILE = "ocean_temp_salt.res.nc" ! default = "temp_salt_z.nc"
                                 ! The name of the z-space input file used to initialize temperatures (T) and
                                 ! salinities (S). If T and S are not in the same file, TEMP_Z_INIT_FILE and
                                 ! SALT_Z_INIT_FILE must be set.
@@ -254,7 +252,7 @@ TEMP_SALT_INIT_VERTICAL_REMAP_ONLY = True !   [Boolean] default = False
                                 ! If true, initial conditions are on the model horizontal grid. Extrapolation
                                 ! over missing ocean values is done using an ICE-9 procedure with vertical ALE
                                 ! remapping .
-OBC_SEGMENT_001_DATA = "U=file:forcing_access_yr2_8km_fill.nc(u),V=file:forcing_access_yr2_8km_fill.nc(v),SSH=file:forcing_access_yr2_8km_fill.nc(eta_t),TEMP=file:forcing_access_yr2_8km_fill.nc(pot_temp),SALT=file:forcing_access_yr2_8km_fill.nc(salt)" !
+OBC_SEGMENT_001_DATA = "U=file:OBC37S_forcing_access_yr2_4km.nc(u),V=file:OBC37S_forcing_access_yr2_4km.nc(v),SSH=file:OBC37S_forcing_access_yr2_4km.nc(eta_t),TEMP=file:OBC37S_forcing_access_yr2_4km.nc(pot_temp),SALT=file:OBC37S_forcing_access_yr2_4km.nc(salt)" !
                                 ! OBC segment docs
 
 ! === module MOM_diag_mediator ===
@@ -265,7 +263,7 @@ DIAG_COORDS = "z Z ZSTAR", "rho2 RHO2 RHO" !
                                 ! A list of string tuples associating diag_table modules to a coordinate
                                 ! definition used for diagnostics. Each string is of the form
                                 ! "MODULE_SUFFIX,PARAMETER_SUFFIX,COORDINATE_NAME".
-DIAG_COORD_DEF_Z = "FILE:ocean_vgrid_cropped.nc,interfaces=zeta" ! default = "WOA09"
+DIAG_COORD_DEF_Z = "FILE:ocean_vgrid.nc,interfaces=zeta" ! default = "WOA09"
                                 ! Determines how to specify the coordinate resolution. Valid options are:
                                 !  PARAM       - use the vector-parameter DIAG_COORD_RES_Z
                                 !  UNIFORM[:N] - uniformly distributed
@@ -516,10 +514,7 @@ TKE_ITIDE_MAX = 0.1             !   [W m-2] default = 1000.0
 READ_TIDEAMP = True             !   [Boolean] default = False
                                 ! If true, read a file (given by TIDEAMP_FILE) containing the tidal amplitude
                                 ! with INT_TIDE_DISSIPATION.
-TIDEAMP_FILE = "tideamp_Charrassin_nocavity_cropped.nc" ! default = "tideamp.nc"
-                                ! The path to the file containing the spatially varying tidal amplitudes with
-                                ! INT_TIDE_DISSIPATION.
-H2_FILE = "bottom_roughness_Charrassin_nocavity_cropped.nc" !
+H2_FILE = "bottom_roughness.nc" !
                                 ! The path to the file containing the sub-grid-scale topographic roughness
                                 ! amplitude with INT_TIDE_DISSIPATION.
 BBL_EFFIC = 0.01                !   [nondim] default = 0.2
@@ -715,7 +710,7 @@ ENTHALPY_FROM_COUPLER = True    !   [Boolean] default = False
 FLUXCONST = 0.11                !   [m day-1] default = 0.0
                                 ! The constant that relates the restoring surface fluxes to the relative surface
                                 ! anomalies (akin to a piston velocity).  Note the non-MKS units.
-SALT_RESTORE_FILE = "salt_restore_interpolated_nearest.nc" ! default = "salt_restore.nc"
+SALT_RESTORE_FILE = "salt_sfc_restore.nc" ! default = "salt_restore.nc"
                                 ! A file in which to find the surface salinity to use for restoring.
 SRESTORE_AS_SFLUX = True        !   [Boolean] default = False
                                 ! If true, the restoring of salinity is applied as a salt flux instead of as a

config.yaml

@@ -32,22 +32,22 @@ jobname: 4km_panAn_om3
 model: access-om3
 exe: access-om3-MOM6-CICE6
 input:
-    - /g/data/tm70/cy8964/mom6/input/input-8km/kmt_Charrassin_nocavity_cropped.nc
-    - /g/data/tm70/cy8964/mom6/input/input-8km/ocean_hgrid_cropped.nc
-    - /g/data/tm70/cy8964/mom6/input/input-8km/ocean_vgrid_cropped.nc
-    - /g/data/tm70/cy8964/mom6/input/input-8km/ACCESS-OM2_IC_bfilled_smoothedland.nc
-    - /g/data/tm70/cy8964/mom6/input/input-8km/salt_restore_interpolated_nearest.nc
-    - /g/data/tm70/cy8964/mom6/input/input-8km/bottom_roughness_Charrassin_nocavity_cropped.nc
-    - /g/data/tm70/cy8964/mom6/input/input-8km/tideamp_Charrassin_nocavity_cropped.nc
-    - /g/data/tm70/cy8964/mom6/input/input-8km/topog_Charrassin_nocavity_cropped.nc
-    - /g/data/tm70/cy8964/mom6/input/input-8km/access-om3-8km-ESMFmesh_Charrassin_nocavity_cropped.nc
-    - /g/data/tm70/cy8964/mom6/input/input-8km/access-om3-8km-nomask-ESMFmesh_Charrassin_nocavity_cropped.nc
+    - /g/data/vk83/prerelease/configurations/inputs/access-om3/panan.4km/2026.01.08/kmt.nc
+    - /g/data/vk83/prerelease/configurations/inputs/access-om3/panan.4km/2026.01.08/ocean_hgrid.nc
+    - /g/data/vk83/prerelease/configurations/inputs/access-om3/panan.4km/2026.01.08/ocean_vgrid.nc
+    - /g/data/vk83/prerelease/configurations/inputs/access-om3/panan.4km/2026.01.08/ocean_temp_salt.res.nc
+    - /g/data/vk83/prerelease/configurations/inputs/access-om3/panan.4km/2026.01.08/salt_sfc_restore.nc
+    - /g/data/vk83/prerelease/configurations/inputs/access-om3/panan.4km/2026.01.08/bottom_roughness.nc
+    - /g/data/vk83/prerelease/configurations/inputs/access-om3/panan.4km/2026.01.08/tideamp.nc
+    - /g/data/vk83/prerelease/configurations/inputs/access-om3/panan.4km/2026.01.08/topog.nc
+    - /g/data/vk83/prerelease/configurations/inputs/access-om3/panan.4km/2026.01.08/access-om3-4km-ESMFmesh.nc
+    - /g/data/vk83/prerelease/configurations/inputs/access-om3/panan.4km/2026.01.08/access-om3-4km-nomask-ESMFmesh.nc
     - /g/data/vk83/prerelease/configurations/inputs/access-om3/share/meshes/share/2026.01.21/JRA55do-datm-ESMFmesh.nc
     - /g/data/vk83/prerelease/configurations/inputs/access-om3/share/meshes/share/2026.01.21/JRA55do-drof-ESMFmesh.nc
-    - /g/data/tm70/cy8964/mom6/input/input-8km/access-om3-8km-rof-remap-weights_Charrassin_nocavity_cropped.nc
+    - /g/data/vk83/prerelease/configurations/inputs/access-om3/panan.4km/2026.01.08/access-om3-4km-rof-remap-weights.nc
     - /g/data/vk83/configurations/inputs/JRA-55/RYF/v1-6/data
-    - /g/data/tm70/cy8964/mom6/input/input-8km/forcing_access_yr2_8km_fill.nc
-    - /g/data/tm70/cy8964/mom6/input/input-8km/diag_rho2.nc
+    - /g/data/vk83/prerelease/configurations/inputs/access-om3/panan.4km/2026.01.08/OBC37S_forcing_access_yr2_4km.nc
+    - /g/data/vk83/prerelease/configurations/inputs/access-om3/panan.4km/2026.01.08/diag_rho2.nc
 
 runlog: true
 metadata: 

datm_in

@@ -8,8 +8,8 @@
   flds_preso3 = .false.
   flds_wiso = .false.
   iradsw = 1
-  model_maskfile = "./INPUT/access-om3-8km-nomask-ESMFmesh_Charrassin_nocavity_cropped.nc"
-  model_meshfile = "./INPUT/access-om3-8km-nomask-ESMFmesh_Charrassin_nocavity_cropped.nc"
+  model_maskfile = "./INPUT/access-om3-4km-nomask-ESMFmesh.nc"
+  model_meshfile = "./INPUT/access-om3-4km-nomask-ESMFmesh.nc"
   nx_global = 4320
   ny_global = 1442
   restfilm = "null"

docs/MOM_parameter_doc.all

@@ -233,7 +233,7 @@ GRID_CONFIG = "mosaic"          !
                                 !     cartesian - use a (flat) Cartesian grid.
                                 !     spherical - use a simple spherical grid.
                                 !     mercator - use a Mercator spherical grid.
-GRID_FILE = "ocean_hgrid_cropped.nc" !
+GRID_FILE = "ocean_hgrid.nc"    !
                                 ! Name of the file from which to read horizontal grid data.
 USE_TRIPOLAR_GEOLONB_BUG = False !   [Boolean] default = False
                                 ! If true, use older code that incorrectly sets the longitude in some points
@@ -267,7 +267,7 @@ TOPO_CONFIG = "file"            !
                                 !     Phillips - ACC-like idealized topography used in the Phillips config.
                                 !     dense - Denmark Strait-like dense water formation and overflow.
                                 !     USER - call a user modified routine.
-TOPO_FILE = "topog_Charrassin_nocavity_cropped.nc" ! default = "topog.nc"
+TOPO_FILE = "topog.nc"          ! default = "topog.nc"
                                 ! The file from which the bathymetry is read.
 TOPO_VARNAME = "depth"          ! default = "depth"
                                 ! The name of the bathymetry variable in TOPO_FILE.
@@ -601,7 +601,7 @@ REGRIDDING_COORDINATE_MODE = "ZSTAR" ! default = "LAYER"
                                 !  ADAPTIVE - optimize for smooth neutral density surfaces
 REGRIDDING_COORDINATE_UNITS = "m" ! default = "m"
                                 ! Units of the regridding coordinate.
-ALE_COORDINATE_CONFIG = "FILE:ocean_vgrid_cropped.nc,interfaces=zeta" ! default = "UNIFORM"
+ALE_COORDINATE_CONFIG = "FILE:ocean_vgrid.nc,interfaces=zeta" ! default = "UNIFORM"
                                 ! Determines how to specify the coordinate resolution. Valid options are:
                                 !  PARAM       - use the vector-parameter ALE_RESOLUTION
                                 !  UNIFORM[:N] - uniformly distributed
@@ -704,13 +704,13 @@ INIT_LAYERS_FROM_Z_FILE = True  !   [Boolean] default = False
                                 ! Z-space file on a latitude-longitude grid.
 
 ! === module MOM_initialize_layers_from_Z ===
-TEMP_SALT_Z_INIT_FILE = "ACCESS-OM2_IC_bfilled_smoothedland.nc" ! default = "temp_salt_z.nc"
+TEMP_SALT_Z_INIT_FILE = "ocean_temp_salt.res.nc" ! default = "temp_salt_z.nc"
                                 ! The name of the z-space input file used to initialize temperatures (T) and
                                 ! salinities (S). If T and S are not in the same file, TEMP_Z_INIT_FILE and
                                 ! SALT_Z_INIT_FILE must be set.
-TEMP_Z_INIT_FILE = "ACCESS-OM2_IC_bfilled_smoothedland.nc" ! default = "ACCESS-OM2_IC_bfilled_smoothedland.nc"
+TEMP_Z_INIT_FILE = "ocean_temp_salt.res.nc" ! default = "ocean_temp_salt.res.nc"
                                 ! The name of the z-space input file used to initialize temperatures, only.
-SALT_Z_INIT_FILE = "ACCESS-OM2_IC_bfilled_smoothedland.nc" ! default = "ACCESS-OM2_IC_bfilled_smoothedland.nc"
+SALT_Z_INIT_FILE = "ocean_temp_salt.res.nc" ! default = "ocean_temp_salt.res.nc"
                                 ! The name of the z-space input file used to initialize temperatures, only.
 Z_INIT_FILE_PTEMP_VAR = "temp"  ! default = "ptemp"
                                 ! The name of the potential temperature variable in TEMP_Z_INIT_FILE.
@@ -787,7 +787,7 @@ OBC_RESERVOIR_INIT_BUG = True   !   [Boolean] default = True
                                 ! If true, set the OBC tracer reservoirs at the startup of a new run from the
                                 ! interior tracer concentrations regardless of properties that may be explicitly
                                 ! specified for the reservoir concentrations.
-OBC_SEGMENT_001_DATA = "U=file:forcing_access_yr2_8km_fill.nc(u),V=file:forcing_access_yr2_8km_fill.nc(v),SSH=file:forcing_access_yr2_8km_fill.nc(eta_t),TEMP=file:forcing_access_yr2_8km_fill.nc(pot_temp),SALT=file:forcing_access_yr2_8km_fill.nc(salt)" !
+OBC_SEGMENT_001_DATA = "U=file:OBC37S_forcing_access_yr2_4km.nc(u),V=file:OBC37S_forcing_access_yr2_4km.nc(v),SSH=file:OBC37S_forcing_access_yr2_4km.nc(eta_t),TEMP=file:OBC37S_forcing_access_yr2_4km.nc(pot_temp),SALT=file:OBC37S_forcing_access_yr2_4km.nc(salt)" !
                                 ! OBC segment docs
 OBC_USER_CONFIG = "none"        ! default = "none"
                                 ! A string that sets how the user code is invoked to set open boundary data:
@@ -822,7 +822,7 @@ DIAG_AS_CHKSUM = False          !   [Boolean] default = False
 AVAILABLE_DIAGS_FILE = "available_diags.000000" ! default = "available_diags.000000"
                                 ! A file into which to write a list of all available ocean diagnostics that can
                                 ! be included in a diag_table.
-DIAG_COORD_DEF_Z = "FILE:ocean_vgrid_cropped.nc,interfaces=zeta" ! default = "WOA09"
+DIAG_COORD_DEF_Z = "FILE:ocean_vgrid.nc,interfaces=zeta" ! default = "WOA09"
                                 ! Determines how to specify the coordinate resolution. Valid options are:
                                 !  PARAM       - use the vector-parameter DIAG_COORD_RES_Z
                                 !  UNIFORM[:N] - uniformly distributed
@@ -1832,12 +1832,12 @@ TKE_ITIDE_MAX = 0.1             !   [W m-2] default = 1000.0
 READ_TIDEAMP = True             !   [Boolean] default = False
                                 ! If true, read a file (given by TIDEAMP_FILE) containing the tidal amplitude
                                 ! with INT_TIDE_DISSIPATION.
-TIDEAMP_FILE = "tideamp_Charrassin_nocavity_cropped.nc" ! default = "tideamp.nc"
+TIDEAMP_FILE = "tideamp.nc"     ! default = "tideamp.nc"
                                 ! The path to the file containing the spatially varying tidal amplitudes with
                                 ! INT_TIDE_DISSIPATION.
 TIDEAMP_VARNAME = "tideamp"     ! default = "tideamp"
                                 ! The name of the tidal amplitude variable in the input file.
-H2_FILE = "bottom_roughness_Charrassin_nocavity_cropped.nc" !
+H2_FILE = "bottom_roughness.nc" !
                                 ! The path to the file containing the sub-grid-scale topographic roughness
                                 ! amplitude with INT_TIDE_DISSIPATION.
 ROUGHNESS_VARNAME = "h2"        ! default = "h2"
@@ -2452,7 +2452,7 @@ ENTHALPY_FROM_COUPLER = True    !   [Boolean] default = False
 FLUXCONST = 0.11                !   [m day-1] default = 0.0
                                 ! The constant that relates the restoring surface fluxes to the relative surface
                                 ! anomalies (akin to a piston velocity).  Note the non-MKS units.
-SALT_RESTORE_FILE = "salt_restore_interpolated_nearest.nc" ! default = "salt_restore.nc"
+SALT_RESTORE_FILE = "salt_sfc_restore.nc" ! default = "salt_restore.nc"
                                 ! A file in which to find the surface salinity to use for restoring.
 SALT_RESTORE_VARIABLE = "salt"  ! default = "salt"
                                 ! The name of the surface salinity variable to read from SALT_RESTORE_FILE for