Update install setup

[minghangli-uni]

This is a draft for now.

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Include optional dependencies:

• access-experiment-generator@main
• access-experiment-runner@main
• access-profiling@47-om3-profiling_temporary
• access-config-utils@32-accessom3-layout

The last two will be updated to main branches too once merged.

EDIT:

The associated optional dependencies are only required for interactive use (e.g. ARE Jupyter Notebook workflows).

---

EDIT:
The tool setup is a bit tricky because esmf-trace does not depend on packages such as access-experiment-generator, access-experiment-runner, access-config-utils, or access-profiling in order to run. These packages are independent tools.

However in practice, users often install these repos into the same python virtual environment to construct end-to-end workflows for profiling and scaling ACCESS models (e.g. experiment generation -> execution -> trace analysis). Hence to keep packaging semantics correct while still supporting these workflows, I propose the following structure:

• pyproject.toml describes only the dependencies required to run esmf-trace itself (plus optional dev/test/interactive tooling if needed).
• Companion ACCESS repos, such as the above four mentioned and potentially others are not listed as package dependencies, but are instead installed via a workspace requirements file.
• The workspace requirements file defines a curated set of repos that can be co-installed into the same virtual environment to support profiling and scaling workflows, without implying a hard dependency relationship.

The goal is to keep esmf-trace packaging clean so it can be published upstream to Spack, while still supporting common end-to-end ACCESS workflows.

[manodeep]

Had a few comments but looks fine overall - though, admittedly, I am not up-to-date with what's been going on with python packaging in the last ~5 years (post setuptools)

[manodeep]

Not sure my approval will count though since I do not have write access