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add basic tests for recipeLoader #65
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,23 @@ | ||
| name: run-tests | ||
| run-name: ✅ Checking '${{'#'}}${{github.ref_name}}' on branch '${{github.head_ref}}' | ||
| on: pull_request | ||
| jobs: | ||
| static-tests: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - name: Checkout | ||
| uses: actions/checkout@v4 | ||
|
|
||
| - name: Set up Bun | ||
| uses: oven-sh/setup-bun@v2 | ||
|
|
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| - name: Install | ||
| run: bun install | ||
|
|
||
| - name: Run Linter | ||
| run: bun run lint | ||
|
|
||
| - name: Run Tests | ||
| # Run test even if the previous step(s) failed | ||
| if: success() || failure() | ||
| run: bun test | ||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,43 @@ | ||
| import { expect, test } from 'vitest'; | ||
| import fs from 'fs'; | ||
| import { isFirebaseRef, getFirebaseRecipe } from '../utils/recipeLoader'; | ||
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| test('isFirebaseRef detects Firebase references correctly', () => { | ||
| expect(isFirebaseRef('firebase:recipes/some_id')).toBe(true); | ||
| expect(isFirebaseRef('firebase:configs/some_id')).toBe(true); | ||
| expect(isFirebaseRef('not_a_firebase_ref')).toBe(false); | ||
| expect(isFirebaseRef('local/file/path')).toBe(false); | ||
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|
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| expect(isFirebaseRef(undefined)).toBe(false); | ||
| expect(isFirebaseRef(null)).toBe(false); | ||
| }); | ||
|
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| test('getFirebaseRecipe works as expected for ER_peroxisome_v_struct_gradient_370574', async () => { | ||
| const recipeId = 'ER_peroxisome_v_struct_gradient_370574'; | ||
| const recipeString = await getFirebaseRecipe(recipeId); | ||
|
|
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| expect(recipeString).toBeDefined(); | ||
| expect(typeof recipeString).toBe('string'); | ||
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| const parsedRecipe = JSON.parse(recipeString); | ||
| expect(parsedRecipe.name).toBeDefined(); | ||
| expect(parsedRecipe.version).toBeDefined(); | ||
|
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| const expectedRecipe = JSON.parse(fs.readFileSync('src/test/test-files/ER_peroxisome.json', 'utf8')); | ||
| expect(parsedRecipe).toEqual(expectedRecipe); | ||
| }); | ||
|
|
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| test('getFirebaseRecipe works as expected for one_sphere', async () => { | ||
| const recipeId = 'one_sphere_v_1.0.0'; | ||
| const recipeString = await getFirebaseRecipe(recipeId); | ||
|
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| expect(recipeString).toBeDefined(); | ||
| expect(typeof recipeString).toBe('string'); | ||
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| const parsedRecipe = JSON.parse(recipeString); | ||
| expect(parsedRecipe.name).toBeDefined(); | ||
| expect(parsedRecipe.version).toBeDefined(); | ||
|
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| const expectedRecipe = JSON.parse(fs.readFileSync('src/test/test-files/one_sphere.json', 'utf8')); | ||
| expect(parsedRecipe).toEqual(expectedRecipe); | ||
| }); | ||
|
|
||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,177 @@ | ||
| { | ||
| "name": "ER_peroxisome", | ||
| "version": "struct_gradient_370574", | ||
| "format_version": "2.1", | ||
| "bounding_box": [ | ||
| [ | ||
| 33.775, | ||
| 35.375, | ||
| 7.125 | ||
| ], | ||
| [ | ||
| 274.225, | ||
| 208.625, | ||
| 106.875 | ||
| ] | ||
| ], | ||
| "grid_file_path": "https://cellpack-analysis-data.s3.us-west-2.amazonaws.com/demo/370574_grid.dat", | ||
| "composition": { | ||
| "membrane": { | ||
| "name": "membrane", | ||
| "molarity": null, | ||
| "regions": { | ||
| "interior": [ | ||
| "nucleus", | ||
| "struct", | ||
| { | ||
| "object": "peroxisome", | ||
| "count": 121 | ||
| } | ||
| ] | ||
| }, | ||
| "count": 1, | ||
| "priority": null, | ||
| "object": "membrane_mesh" | ||
| }, | ||
| "nucleus": { | ||
| "name": "nucleus", | ||
| "priority": null, | ||
| "regions": { | ||
| "interior": [] | ||
| }, | ||
| "molarity": null, | ||
| "count": 1, | ||
| "object": "nucleus_mesh" | ||
| }, | ||
| "struct": { | ||
| "name": "struct", | ||
| "regions": { | ||
| "interior": [] | ||
| }, | ||
| "molarity": null, | ||
| "count": 1, | ||
| "priority": null, | ||
| "object": "struct_mesh" | ||
| }, | ||
| "bounding_area": { | ||
| "name": "bounding_area", | ||
| "priority": null, | ||
| "regions": { | ||
| "interior": [ | ||
| "membrane" | ||
| ] | ||
| }, | ||
| "object": null, | ||
| "count": null, | ||
| "molarity": null | ||
| } | ||
| }, | ||
| "objects": { | ||
| "membrane_mesh": { | ||
| "name": "membrane_mesh", | ||
| "representations": { | ||
| "mesh": { | ||
| "path": "https://cellpack-analysis-data.s3.us-west-2.amazonaws.com/demo", | ||
| "name": "mem_mesh_370574.obj", | ||
| "format": "obj" | ||
| }, | ||
| "atomic": null, | ||
| "packing": null, | ||
| "active": null | ||
| }, | ||
| "partners": { | ||
| "all_partners": [] | ||
| }, | ||
| "type": "mesh", | ||
| "color": [ | ||
| 0.75, | ||
| 0.75, | ||
| 0.75 | ||
| ] | ||
| }, | ||
| "peroxisome": { | ||
| "name": "peroxisome", | ||
| "partners": { | ||
| "all_partners": [] | ||
| }, | ||
| "jitter_attempts": 300, | ||
| "radius": 2.37, | ||
| "gradient": "struct_gradient", | ||
| "representations": { | ||
| "mesh": null, | ||
| "active": null, | ||
| "packing": null, | ||
| "atomic": null | ||
| }, | ||
| "packing_mode": "gradient", | ||
| "color": [ | ||
| 0, | ||
| 1, | ||
| 0 | ||
| ], | ||
| "type": "single_sphere" | ||
| }, | ||
| "nucleus_mesh": { | ||
| "name": "nucleus_mesh", | ||
| "color": [ | ||
| 0.25, | ||
| 0.25, | ||
| 0.25 | ||
| ], | ||
| "partners": { | ||
| "all_partners": [] | ||
| }, | ||
| "representations": { | ||
| "mesh": { | ||
| "name": "nuc_mesh_370574.obj", | ||
| "path": "https://cellpack-analysis-data.s3.us-west-2.amazonaws.com/demo", | ||
| "format": "obj" | ||
| }, | ||
| "atomic": null, | ||
| "active": null, | ||
| "packing": null | ||
| }, | ||
| "type": "mesh" | ||
| }, | ||
| "struct_mesh": { | ||
| "name": "struct_mesh", | ||
| "representations": { | ||
| "atomic": null, | ||
| "packing": null, | ||
| "active": null, | ||
| "mesh": { | ||
| "name": "struct_mesh_370574.obj", | ||
| "format": "obj", | ||
| "path": "https://cellpack-analysis-data.s3.us-west-2.amazonaws.com/demo" | ||
| } | ||
| }, | ||
| "color": [ | ||
| 0.5, | ||
| 0.5, | ||
| 0.5 | ||
| ], | ||
| "type": "mesh", | ||
| "partners": { | ||
| "all_partners": [] | ||
| } | ||
| } | ||
| }, | ||
| "gradients": { | ||
| "struct_gradient": { | ||
| "name": "struct_gradient", | ||
| "invert": null, | ||
| "mode": "surface", | ||
| "pick_mode": "linear", | ||
| "weight_mode": "exponential", | ||
| "weight_mode_settings": { | ||
| "decay_length": 0.01 | ||
| }, | ||
| "reversed": false, | ||
| "description": "gradient based on distance from the surface of the struct mesh", | ||
| "mode_settings": { | ||
| "object": "struct", | ||
| "scale_to_next_surface": false | ||
| } | ||
| } | ||
| } | ||
| } |
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good idea to move lint tests here!