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adjust suppFigS9F percent cutoff #60

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Merged
cfrick13 merged 1 commit into from
Feb 7, 2025
Merged

adjust suppFigS9F percent cutoff #60

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8 changes: 4 additions & 4 deletions nuc_morph_analysis/analyses/volume/figure_5_s9_workflow.py
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Original file line number Diff line number Diff line change
Expand Up @@ -156,11 +156,11 @@
# %% Calculate average growth rate over beginning and end subsets of tracks

# only choose values from defined regions of normalized interphase time
t1 = 0.3
t2 = 0.75
t1 = 0.5
t2 = 0.5
dfin = add_binned_normalized_time_for_full_tracks(df_full)
df_t1 = dfin[(dfin["digitized_normalized_time"] < t1)].groupby("track_id").agg("mean")
df_t2 = dfin[(dfin["digitized_normalized_time"] > t2)].groupby("track_id").agg("mean")
df_t1 = dfin[(dfin["normalized_time"] < t1)].groupby("track_id").agg("mean")
df_t2 = dfin[(dfin["normalized_time"] > t2)].groupby("track_id").agg("mean")

# now require that the track_id is in both dfq1 and dfq2
df_t1 = df_t1[df_t1.index.isin(df_t2.index)]
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