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CoRAL SV arc colors do not match AA

bugSomething isn't workingSomething isn't working

Status: Open.

#71 In AmpliconSuite/CoRAL;

· jluebeck opened on May 19, 2026

Applicability to linear amplifications

Status: Open.

#66 In AmpliconSuite/CoRAL;

· Grigory-Kornienko opened on Dec 22, 2025

can not create .cns file

Status: Open.

#64 In AmpliconSuite/CoRAL;

· R0nGuan opened on Nov 27, 2025

Specific settings for short DNA

Status: Open.

#63 In AmpliconSuite/CoRAL;

· AlexUOM opened on Oct 1, 2025

Why are all of my cycles outputs not cyclic?

Status: Open.

#62 In AmpliconSuite/CoRAL;

· HaHaLiang666 opened on Aug 27, 2025

Classification of ecDNAs

Status: Open.

#61 In AmpliconSuite/CoRAL;

· silkrp opened on Aug 5, 2025

Differences in ecDNA predictions between AmpliconArchitect and CoRAL across glioblastoma cell lines

Status: Open.

#59 In AmpliconSuite/CoRAL;

· silkrp opened on Jul 16, 2025

CRAM file format support inquiry

Status: Open.

#56 In AmpliconSuite/CoRAL;

· SGIlabes opened on Jun 28, 2025

breakpoint graph, Assertion error

Status: Open.

#48 In AmpliconSuite/CoRAL;

· sarmadmehmood89 opened on May 22, 2025

Key error in hsr step

Status: Open.

#46 In AmpliconSuite/CoRAL;

· aysegokce opened on May 7, 2025

coral hsr command fails with TypeError: 'ChimericAlignment' object is not iterable

Status: Open.

#44 In AmpliconSuite/CoRAL;

· silkrp opened on Apr 29, 2025

AmpliconClassifier

Status: Open.

#43 In AmpliconSuite/CoRAL;

· thomasjay3 opened on Apr 29, 2025