Interactions view

.eslintrc.cjs

@@ -26,7 +26,7 @@ module.exports = {
     'react/react-in-jsx-scope': 'off',
     'react/jsx-uses-react': 'off',
     'simple-import-sort/imports': 'error',
-    'simple-import-sort/exports': 'error',
+    'simple-import-sort/exports': 'error'
   },
   'overrides': [
     {
@@ -55,10 +55,5 @@ module.exports = {
         ]
       }
     }
-  ],
-  "settings": {
-    "react": {
-      "version": "detect"
-    }
-  }
+  ]
 }

.github/workflows/build.yml

@@ -12,15 +12,14 @@ jobs:
       contents: read
     steps:
       - name: Checkout
-        uses: actions/checkout@v4
+        uses: actions/checkout@v3
         with:
           fetch-depth: 0
       - name: Use Node.js
-        uses: actions/setup-node@v4
+        uses: actions/setup-node@v3
         with:
-          node-version: '22.x'
+          node-version: '20.x'
       - run: npm ci
       - run: npm run build
         env:
           BASE_URL: '/ePlant'
-          VITE_MAPS_API_KEY: ${{ secrets.VITE_MAPS_API_KEY }}

.github/workflows/deploy.yml

@@ -17,21 +17,22 @@ jobs:
       contents: read
     steps:
       - name: Checkout
-        uses: actions/checkout@v4
+        uses: actions/checkout@v3
         with:
           fetch-depth: 0
       - name: Use Node.js
-        uses: actions/setup-node@v4
+        uses: actions/setup-node@v3
         with:
-          node-version: '22.x'
+          node-version: '20.x'
       - run: npm ci
       - run: npm run build
         env:
           BASE_URL: '/ePlant'
           VITE_MAPS_API_KEY: ${{ secrets.VITE_MAPS_API_KEY }}
+          VITE_MAPS_ID: ${{ secrets.VITE_MAPS_ID }}
       - run: mv dist _site
       - name: Upload artifact
-        uses: actions/upload-pages-artifact@v3
+        uses: actions/upload-pages-artifact@v2
   deploy:
     environment:
       name: github-pages
@@ -41,4 +42,4 @@ jobs:
     steps:
       - name: Deploy to GitHub Pages
         id: deployment
-        uses: actions/deploy-pages@v4
+        uses: actions/deploy-pages@v2

.github/workflows/linting.yml

@@ -10,10 +10,10 @@ jobs:
 
     steps:
       - name: Checkout code
-        uses: actions/checkout@v4
+        uses: actions/checkout@v2
 
       - name: Setup Node.js
-        uses: actions/setup-node@v4
+        uses: actions/setup-node@v3
         with:
           node-version: '20.x'
 

.github/workflows/node.js.yml

@@ -20,9 +20,9 @@ jobs:
         # See supported Node.js release schedule at https://nodejs.org/en/about/releases/
 
     steps:
-    - uses: actions/checkout@v4
+    - uses: actions/checkout@v3
     - name: Use Node.js ${{ matrix.node-version }}
-      uses: actions/setup-node@v4
+      uses: actions/setup-node@v3
       with:
         node-version: ${{ matrix.node-version }}
         cache: 'npm'

.gitignore

@@ -106,4 +106,11 @@ dist
 
 # notes files
 *-notes.md
-.DS_Store
+.DS_Store
+
+
+# Docker (yonah)
+.dockerignore
+Dockerfile
+Dockerfile.develop
+docker-compose.yml

Eplant/config.ts

@@ -7,10 +7,9 @@ import ExperimentEFP from './views/ExperimentEFP'
 import FallbackView from './views/FallbackView'
 import GeneInfoView from './views/GeneInfoView'
 import GetStartedView from './views/GetStartedView'
-import NavigatorView from './views/NavigatorViewer'
+import InteractionsViewer from './views/InteractionsViewer'
 import PlantEFP from './views/PlantEFP'
 import PublicationViewer from './views/PublicationViewer'
-import WorldEFP from './views/WorldEFP'
 import { type View } from './View'
 
 export type EplantConfig = {
@@ -34,9 +33,8 @@ const userViews = [
   PlantEFP,
   CellEFP,
   ExperimentEFP,
-  WorldEFP,
   ChromosomeViewer,
-  NavigatorView,
+  InteractionsViewer,
 ]
 
 // List of views that are used to lookup a view by id

Eplant/state/index.tsx

@@ -95,7 +95,7 @@ export function atomWithStorage<T>(
 
 // TODO: This should probably be removed
 // Atom with storage that doesn't persist when persistAtom is set to false
-export function atomWithOptionalStorage<T>(
+function atomWithOptionalStorage<T>(
   key: string,
   initialValue: T,
   serialize: (value: T) => string = JSON.stringify,