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@CoBrALab

Computational Brain Anatomy Laboratory

Computational Brain Anatomy Laboratory, located in the CIC at the Douglas Institute, McGill University

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  1. atlases atlases Public

    Segmentations of Neuroanatomy on Hi-Res T1 and T2 MRIs and publicly available population averages in MNI space

    Python 38 21

  2. optimized_antsMultivariateTemplateConstruction optimized_antsMultivariateTemplateConstruction Public

    A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support

    Shell 40 12

  3. AllenHumanGeneMNI AllenHumanGeneMNI Public

    Careful multispectral registration of the Allen Human Brain Gene Samples in MNI ICBM NLIN SYM 09c space

    Jupyter Notebook 12 1

  4. MAGeTBrain-nextflow MAGeTBrain-nextflow Public

    Shell 3 1

  5. RABIES RABIES Public

    fMRI preprocessing pipeline and analysis tools adapted for rodent images. Visit the full documentation at https://rabies.readthedocs.io/

    Python 62 22

  6. libBIDS.sh libBIDS.sh Public

    Shell 22 4

Repositories

Showing 10 of 60 repositories
  • RABIES Public

    fMRI preprocessing pipeline and analysis tools adapted for rodent images. Visit the full documentation at https://rabies.readthedocs.io/

    CoBrALab/RABIES's past year of commit activity
    Python 62 22 56 6 Updated Oct 3, 2026
  • ODC-Mouse-Forms Public

    A repo containing OpenDataCapture forms for tracking mouse data gathered from experiments within the CoBra Lab

    CoBrALab/ODC-Mouse-Forms's past year of commit activity
    TypeScript 2 1 19 0 Updated Oct 2, 2026
  • igl Public

    Analysis code for the manuscript "Gendered behaviors are associated with health beyond binary sex"

    CoBrALab/igl's past year of commit activity
    R 0 0 0 0 Updated Sep 28, 2026
  • optimized_antsMultivariateTemplateConstruction Public

    A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support

    CoBrALab/optimized_antsMultivariateTemplateConstruction's past year of commit activity
    Shell 40 12 42 2 Updated Sep 22, 2026
  • NormativeModelWeb Public
    CoBrALab/NormativeModelWeb's past year of commit activity
    0 0 4 0 Updated Sep 21, 2026
  • antsRegistration_affine_SyN Public
    CoBrALab/antsRegistration_affine_SyN's past year of commit activity
    Shell 3 0 2 2 Updated Sep 16, 2026
  • qbatch Public
    CoBrALab/qbatch's past year of commit activity
    Python 34 Unlicense 13 14 1 Updated Sep 16, 2026
  • LMT-Overlay-Pipeline Public

    GUI-driven pipeline for generating corrected LMT tracking overlays from SQLite ground-truth data and raw videos. Renders per-animal segmentation masks, pose markers, posture labels, and global frame numbers while preserving the original database and source videos.

    CoBrALab/LMT-Overlay-Pipeline's past year of commit activity
    Python 0 MIT 1 0 0 Updated Sep 7, 2026
  • LMT-QC-Pipeline Public

    A quality control pipeline for Live Mouse Tracker (LMT) behavioral tracking data using automated gap inference and human-in-the-loop validation.

    CoBrALab/LMT-QC-Pipeline's past year of commit activity
    Python 0 MIT 0 1 0 Updated Aug 28, 2026
  • pvraw Public Forked from BrkRaw/brkraw

    Convert raw Bruker Biospin MRI data to NIfTI/BIDS

    CoBrALab/pvraw's past year of commit activity
    Python 0 GPL-3.0 31 2 0 Updated Aug 27, 2026
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