simpleitk_timeseries_motion_correction install was removed from setup…

[Gab-D-G]

….py as it does not exists on PyPi. It is instead installed through the .yml files, and listed in dependencies.txt.

Summary by CodeRabbit

• Chores
  • Standardized package dependency specifications across build and environment configuration files.

[coderabbitai]

No actionable comments were generated in the recent review. 🎉

ℹ️ Recent review info

⚙️ Run configuration

Configuration used: defaults

Review profile: CHILL

Plan: Pro

Run ID: 8f2eed2d-cdf7-41dc-9dce-0032c7e3cc1d

📥 Commits

Reviewing files that changed from the base of the PR and between 90cda37 and 9c523e3.

📒 Files selected for processing (5)

• Dockerfile
• dependencies.txt
• rabies_environment.dev.yml
• rabies_environment.yml
• setup.py

💤 Files with no reviewable changes (2)

• Dockerfile
• setup.py

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📝 Walkthrough

Walkthrough

The pull request reorganizes the dependency declaration for simpleitk_timeseries_motion_correction across configuration files. The dependency is removed from setup.py and Dockerfile, added to conda environment files, and reformatted to use a PEP 508-style Git reference pinned to a specific commit.

Changes

Cohort / File(s)	Summary
Build Configuration Dockerfile	Removed git installation and separate pip install for simpleitk_timeseries_motion_correction, streamlining the build process by relying on environment-based dependency resolution.
Conda Environment Definitions rabies_environment.dev.yml, rabies_environment.yml	Added git to Conda dependencies and added simpleitk_timeseries_motion_correction as a pip-installed package pinned to commit 8cc2b031c22df5cf8d01f75ec186570dd3ffb3e9.
Dependency Specifications dependencies.txt, setup.py	Updated dependencies.txt to PEP 508-style Git reference format and removed simpleitk_timeseries_motion_correction from setup.py's REQUIRED list, consolidating dependency management into environment files.

Estimated code review effort

🎯 2 (Simple) | ⏱️ ~10 minutes

Possibly related PRs

• Review python dependencies #488: Modifies the same simpleitk_timeseries_motion_correction dependency pinning across environment, Dockerfile, and setup configurations.

Suggested reviewers

• gdevenyi

Poem

🐰 A dep moves house from setup to yml,
Git commit pinned, with steadfast will,
Dockerfile lightens, environment grows,
Dependencies flow where the conda wind blows! 🌪️

🚥 Pre-merge checks | ✅ 3

✅ Passed checks (3 passed)

Check name	Status	Explanation
Description Check	✅ Passed	Check skipped - CodeRabbit’s high-level summary is enabled.
Title check	✅ Passed	The title accurately summarizes the main change: removing simpleitk_timeseries_motion_correction from setup.py due to PyPI unavailability, with the dependency moved to environment files instead.
Docstring Coverage	✅ Passed	No functions found in the changed files to evaluate docstring coverage. Skipping docstring coverage check.

_{✏️ Tip: You can configure your own custom pre-merge checks in the settings.}

✨ Finishing Touches

📝 Generate docstrings

• Create stacked PR
• Commit on current branch

🧪 Generate unit tests (beta)

• Create PR with unit tests
• Commit unit tests in branch move_simpleitk_timeseries_motion_correction_dependency

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