Adding cycling to 3dvar_cf suite

src/swell/configuration/jedi/interfaces/geos_cf/namelists/CAP_c360.rc

@@ -0,0 +1,34 @@
+
+MAPLROOT_COMPNAME: GCM
+        ROOT_NAME: GCM
+ROOT_CF: AGCM.rc
+HIST_CF: HISTORY.rc
+
+# doesn't matter, cap_restart
+BEG_DATE:     20000101 000000
+# can cap your run
+END_DATE:     29990302 210000 
+
+# length of a sigle segment/job 1day
+JOB_SGMT:     >>SWELL_FC_LENGTH<<
+# number of times you run the job/seg
+NUM_SGMT:     1
+HEARTBEAT_DT:       300
+
+USE_SHMEM: 0
+
+# Parameters for Cycled REPLAY Forecasts
+# --------------------------------------
+ BEG_REPDATE: YYYYMMDD
+ END_REPDATE: YYYYMMDD
+FCST_SEGMENT: 00000000
+
+#PERPETUAL_YEAR:   YYYY
+#PERPETUAL_MONTH:    MM
+#PERPETUAL_DAY:      DD
+
+MAPL_ENABLE_TIMERS: NO
+MAPL_ENABLE_MEMUTILS: NO
+PRINTSPEC: 0  # (0: OFF, 1: IMPORT & EXPORT, 2: IMPORT, 3: EXPORT)
+
+USE_EXTDATA2G: .TRUE.

src/swell/configuration/jedi/interfaces/geos_cf/namelists/CAP_c90.rc

@@ -0,0 +1,34 @@
+
+MAPLROOT_COMPNAME: GCM
+        ROOT_NAME: GCM
+ROOT_CF: AGCM.rc
+HIST_CF: HISTORY.rc
+
+# doesn't matter, cap_restart
+BEG_DATE:     20000101 000000
+# can cap your run
+END_DATE:     29990302 210000 
+
+# length of a sigle segment/job 1day
+JOB_SGMT:     >>SWELL_FC_LENGTH<<
+# number of times you run the job/seg
+NUM_SGMT:     1
+HEARTBEAT_DT:       900
+
+USE_SHMEM: 0
+
+# Parameters for Cycled REPLAY Forecasts
+# --------------------------------------
+ BEG_REPDATE: YYYYMMDD
+ END_REPDATE: YYYYMMDD
+FCST_SEGMENT: 00000000
+
+#PERPETUAL_YEAR:   YYYY
+#PERPETUAL_MONTH:    MM
+#PERPETUAL_DAY:      DD
+
+MAPL_ENABLE_TIMERS: NO
+MAPL_ENABLE_MEMUTILS: NO
+PRINTSPEC: 0  # (0: OFF, 1: IMPORT & EXPORT, 2: IMPORT, 3: EXPORT)
+
+USE_EXTDATA2G: .TRUE.

src/swell/configuration/jedi/interfaces/geos_cf/namelists/GEOSCHEMchem_AnaSettings_CO.rc

@@ -0,0 +1,19 @@
+SpeciesName: CO
+Active: 0
+AnalysisFreq: 1
+AnalysisHour: 0
+AnalysisMinute: 0
+ForwardLooking: 0
+FileTemplate: >>SWELL_RUNDIR<</jedi.inc.%y4%m2%d2.%h2z.nc
+FileVarName: CO
+FileVarUnit: v/v
+UseObsHour: 0
+ObsHourName: ana_hour
+ApplyIncrement: 1
+InStrat: 0
+InTrop: 1
+AnaFraction: 1.0
+MaxChangeStrat: 0.0
+MaxChangeTrop: -1.0
+HasSpec2: 0
+ErrorMode: 1

src/swell/configuration/jedi/interfaces/geos_cf/namelists/GEOSCHEMchem_AnaSettings_NO2.rc

@@ -0,0 +1,20 @@
+SpeciesName: NO2
+Active: 1
+AnalysisFreq: 1
+AnalysisHour: 0
+AnalysisMinute: 0
+ForwardLooking: 0
+FileTemplate: >>SWELL_RUNDIR<</jedi.inc.%y4%m2%d2.%h2z.nc
+FileVarName: NO2
+FileVarUnit: v/v
+UseObsHour: 0
+ObsHourName: ana_hour
+ApplyIncrement: 1
+InStrat: 0
+InTrop: 1
+IAU: 1
+AnaFraction: 1.0
+MaxChangeStrat: 0.0
+MaxChangeTrop: -1.0
+HasSpec2: 0
+ErrorMode: 1

src/swell/configuration/jedi/interfaces/geos_cf/namelists/GEOSCHEMchem_AnaSettings_O3.rc

@@ -0,0 +1,31 @@
+SpeciesName: O3
+Active: 1
+AnalysisFreq: 3
+AnalysisHour: 1
+AnalysisMinute: 30
+ForwardLooking: 1
+FileTemplate: /discover/nobackup/projects/gmao/yotc/pub/fp/das/Y%y4/M%m2/D%d2/GEOS.fp.asm.tavg3_3d_asm_Nv.%y4%m2%d2_%h2%n2.V01.nc4
+FileVarName: O3 
+NonZeroIncOnly: 0
+FileVarNameInc: O3 
+FileVarUnit: kg/kg
+UseObsHour: 0
+ObsHourName: ana_hour
+ApplyIncrement: 0
+InStrat: 1
+InTrop: 0
+AnaL1: 1
+AnaL2: 1
+AnaL3: 72
+AnaL4: 72
+StratSponge: 2
+AnaFraction: 0.2
+MaxChangeStrat: -1.0 
+MaxChangeTrop:  -1.0
+HasSpec2: 0
+Spec2Name: O,O1D
+Spec2Strat: 1,1
+Spec2Trop: 1,0
+Spec2MinRatio: 0.1
+Spec2MaxRatio: 10.0
+ErrorMode: 1