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fix(skill): preserve persisted scan options across skill runs - #4250

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deepanshupal:fix/4240-persisted-skill-scan-options
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fix(skill): preserve persisted scan options across skill runs#4250
deepanshupal wants to merge 1 commit into
Graphify-Labs:v8from
deepanshupal:fix/4240-persisted-skill-scan-options

fix(skill): preserve persisted scan options across skill runs

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Graphify Labs / Graphify succeeded Oct 8, 2026 in 1m 52s

Graphify — looks good

Looks safe to merge — no coupling regressions and no blocking issues, checked against the code graph (not a self-assessment).

Details

Graphify reviewed this change.

Looks safe to merge — no coupling regressions and no blocking issues, checked against the code graph (not a self-assessment).

Graphify review — findings

Makes the skill templates' detect and detect_incremental steps read the build's saved exclude patterns and gitignore setting through _read_build_excludes and _read_build_gitignore against out_path(). A skill-driven run now skips the same files the CLI build does. Before, it re-scanned paths the build had already excluded.

Review partial — this diff was larger than one review pass covers, so later files were not reviewed; some findings may be missing.

Analysis details — impact, health, verification

Impact & health

Graphify review

Impact — 1228 functions depend on the 1160 functions this change touches.

Health — this change adds coupling hotspots:

  • new: render() — 13 callers, 5 callees
  • new: audit_coverage() — 8 callers, 6 callees
  • new: main() — 3 callers, 11 callees
  • new: monolith_roundtrip() — 3 callers, 5 callees
  • new: test_audit_catches_a_dropped_non_allowlisted_heading() — 0 callers, 6 callees

Verification — 1228 functions in the blast radius were not formally verified this run (proofs are advisory here).

Gate & verification

graphify gate

PASS — objectively clean (no health regressions, tests not run — proofs not run this pass (advisory)). Grounded, not self-assessed.

Advisory (not blocking):

  • verification_scope: 1228 function(s) in the blast radius were not formally verified this run

Test selection

Test selection

345 of 345 test file(s) selected (100%) via static blast radius.

Escalated to a full run for safety — the selection is not trustworthy on its own (see below). CI should run the whole suite.

  • tests/test_affected_cli.py — full-run-safety
  • tests/test_affected_member_seed.py — full-run-safety
  • tests/test_agents_platform.py — full-run-safety
  • tests/test_analyze.py — full-run-safety
  • tests/test_anthropic_custom_endpoint.py — full-run-safety
  • tests/test_antigravity_install.py — full-run-safety
  • tests/test_apm_fallback_version.py — full-run-safety
  • tests/test_architecture_doc.py — full-run-safety
  • tests/test_astro_extraction.py — full-run-safety
  • tests/test_astro_import_ids.py — full-run-safety
  • tests/test_atomic_canvas_export.py — full-run-safety
  • tests/test_atomic_version_stamp.py — full-run-safety
  • tests/test_atomic_writes.py — full-run-safety
  • tests/test_backend_env_isolation.py — full-run-safety
  • tests/test_backend_extras.py — full-run-safety
  • tests/test_benchmark.py — full-run-safety
  • tests/test_benchmark_raw_graph.py — full-run-safety
  • tests/test_blade_extractor.py — full-run-safety
  • tests/test_build.py — full-run-safety
  • tests/test_build_located_semantic_identity.py — full-run-safety
  • tests/test_build_merge_dedup_scope.py — full-run-safety
  • tests/test_build_merge_hyperedges_and_prune.py — full-run-safety
  • tests/test_build_merge_shrink_guard.py — full-run-safety
  • tests/test_builtin_global_type_refs.py — full-run-safety
  • tests/test_cache.py — full-run-safety
  • tests/test_cache_stale_import_target.py — full-run-safety
  • tests/test_callflow_html.py — full-run-safety
  • tests/test_cargo_introspect.py — full-run-safety
  • tests/test_cargo_missing_manifest.py — full-run-safety
  • tests/test_carried_hyperedge_remap.py — full-run-safety
  • tests/test_case_sensitive_resolution.py — full-run-safety
  • tests/test_charmap_encoding.py — full-run-safety
  • tests/test_chunking.py — full-run-safety
  • tests/test_cjs_module_extension.py — full-run-safety
  • tests/test_claude_cli_backend.py — full-run-safety
  • tests/test_claude_md.py — full-run-safety
  • tests/test_cli_broken_pipe.py — full-run-safety
  • tests/test_cli_export.py — full-run-safety
  • tests/test_cli_help.py — full-run-safety
  • tests/test_cluster.py — full-run-safety
  • tests/test_cluster_exclude_hubs.py — full-run-safety
  • tests/test_cobol_extractor.py — full-run-safety
  • tests/test_codebuddy.py — full-run-safety
  • tests/test_community_hub_labels.py — full-run-safety
  • tests/test_community_labels_skill.py — full-run-safety
  • tests/test_confidence.py — full-run-safety
  • tests/test_corrupt_graph_json.py — full-run-safety
  • tests/test_cpp_method_declarations.py — full-run-safety
  • tests/test_cpp_nested_and_cli.py — full-run-safety
  • tests/test_cpp_objc_cross_file_calls.py — full-run-safety
  • … and 295 more

non-code file(s) changed (graphify/skill-agents.md, graphify/skill-aider.md, graphify/skill-amp.md, graphify/skill-claw.md, graphify/skill-codex.md …) → running the full suite for safety (a code graph can't see config/fixture/data deps)

changed code file(s) with no mapped test (graphify/skill-agents.md, graphify/skill-aider.md, graphify/skill-amp.md, graphify/skill-claw.md, graphify/skill-codex.md …) — a coverage gap or a missing link — running the full suite rather than only the selected tests

Selection is safe under the controlled-regression assumption; always-run tests + a periodic full run are the backstops. Advisory — it never changes the check verdict.

View more details on Graphify Labs