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Merge dev into main Sync to Compact Branch #100: Commit 767e888 pushed by yingyue2030699
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add information print Sync to Compact Branch #99: Commit 1af0947 pushed by sangmk
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Merge pull request #96 from PhysFoley/main Sync to Compact Branch #98: Commit e0a121a pushed by PhysFoley
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Update nerdss server link in README.md Sync to Compact Branch #97: Commit 4c84c90 pushed by PhysFoley
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Second try fixing test_nerdss_model_pdb_model error Sync to Compact Branch #96: Commit 1b892bf pushed by sangmk
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Fixed the test errors by: Sync to Compact Branch #95: Commit 2773eeb pushed by sangmk
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Optimize ESM2 model loading during coarse-graining Sync to Compact Branch #94: Commit 37f5af5 pushed by sangmk
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Merge pull request #95 from JohnsonBiophysicsLab/sangmk-patch-1 Sync to Compact Branch #93: Commit e7e870c pushed by sangmk
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Refactor ProAffinity integration: move models to nerdss_model, update… Sync to Compact Branch #92: Commit 8afff93 pushed by sangmk
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Merge feature/affinity-prediction: Add ProAffinity-GNN binding affini… Sync to Compact Branch #91: Commit 7240e29 pushed by sangmk
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Merge pull request #94 from JohnsonBiophysicsLab/pip-test Sync to Compact Branch #90: Commit ae7a555 pushed by yingyue2030699
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Merge pull request #93 from JohnsonBiophysicsLab/yingyue2030699-patch-1 Sync to Compact Branch #89: Commit df4f810 pushed by yingyue2030699
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Merge pull request #92 from JohnsonBiophysicsLab/revert-91-pip-test Sync to Compact Branch #88: Commit 1b8b90d pushed by yingyue2030699
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Merge pull request #91 from JohnsonBiophysicsLab/pip-test Sync to Compact Branch #87: Commit e284218 pushed by yingyue2030699
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publish version 1.2.0 on pypi Sync to Compact Branch #86: Commit 3aa7107 pushed by sangmk
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feat: Integrate ProAffinity-GNN for binding energy prediction Sync to Compact Branch #85: Commit 396016e pushed by sangmk
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Update .gitignore Sync to Compact Branch #84: Commit 3a75998 pushed by yingyue2030699
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proteins always have exclusion volumes Sync to Compact Branch #83: Commit 67c6c2e pushed by sangmk
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minor change to simularium conversion Sync to Compact Branch #82: Commit e1377fb pushed by sangmk
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update the core orchrestration class for the new updates Sync to Compact Branch #81: Commit ea11f05 pushed by yingyue2030699
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ignore pml files Sync to Compact Branch #80: Commit cf766b2 pushed by yingyue2030699
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ion.Analyzer instead of ion.Analysis, it was a typo Sync to Compact Branch #79: Commit 562a162 pushed by sangmk
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Merge branch 'main' of https://github.com/JohnsonBiophysicsLab/ionerdss Sync to Compact Branch #78: Commit 47d0f71 pushed by sangmk
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Rename math to utils in tests Sync to Compact Branch #77: Commit 4f269ea pushed by yingyue2030699
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Merge branch 'main' of https://github.com/JohnsonBiophysicsLab/ionerdss Sync to Compact Branch #76: Commit afaf368 pushed by yingyue2030699
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