build(deps): bump ihm from 2.2 to 2.5

[dependabot]

Bumps ihm from 2.2 to 2.5.

Release notes

Sourced from ihm's releases.

python-ihm 2.5 release

• Assemblies are now checked at file-output time to ensure that each asym referenced in an assembly is represented by atoms and/or spheres in at least one model (#165).
• make_mmcif has a new --check_atom_names option which, if set, will check for any non-canonical atom names (#166).
• pip install should no longer fail to install if the C extension module cannot be built; it will fall back to use the slower pure Python implementation.

Full Changelog: ihmwg/python-ihm@2.4...2.5

python-ihm 2.4 release

• Add support for fits of model groups or ensembles to cross-links using the new ihm.restraint.CrossLinkGroupFit class.

Full Changelog: ihmwg/python-ihm@2.3...2.4

python-ihm 2.3 release

• The C-accelerated BinaryCIF parser now supports interval quantization encoding and a wider range of data types.
• make_mmcif now has a new --histidines option to convert any non-standard histidine names to HIS (#164).
• Bugfix: don't change name or description of the complete assembly in make_mmcif.
• Bugfix: if ihm.reference.SeqDif is used to annotate an insertion or deletion, don't erroneously claim the alignment is incorrect.

Full Changelog: ihmwg/python-ihm@2.2...2.3

Changelog

Sourced from ihm's changelog.

2.5 - 2025-04-25

• Assemblies are now checked at file-output time to ensure that each asym referenced in an assembly is represented by atoms and/or spheres in at least one model (#165).
• make_mmcif has a new --check_atom_names option which, if set, will check for any non-canonical atom names (#166).
• pip install should no longer fail to install if the C extension module cannot be built; it will fall back to use the slower pure Python implementation.

2.4 - 2025-03-25

• Add support for fits of model groups or ensembles to cross-links using the new :class:ihm.restraint.CrossLinkGroupFit class.

2.3 - 2025-03-13

• The C-accelerated BinaryCIF parser now supports interval quantization encoding and a wider range of data types.
• make_mmcif now has a new --histidines option to convert any non-standard histidine names to HIS (#164).
• Bugfix: don't change name or description of the complete assembly in make_mmcif.
• Bugfix: if :class:ihm.reference.SeqDif is used to annotate an insertion or deletion, don't erroneously claim the alignment is incorrect.

Commits

• 84316fc Prepare for 2.5 release
• d4c45e6 Use assembly's Python object ID, not _id attribute
• 6a2f30e Put back --without-ext command line setup.py option
• 7301526 Fix module name
• 445f67f Check canonical atoms in OK file too
• 4874f6a Add option to query CCD for non-standard residues
• 19f192a Move non-canonical atom name check to make_mmcif
• d3d3e78 Remove license classifier
• e06fd2d Make C extension non-optional for RPM, .deb builds
• abef471 Revert "Test C extension in basic install test"
• Additional commits viewable in compare view

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