Adds --gzip-compressed flag to kraken2 - Fixes #86 #87

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kerchner wants to merge 1 commit into carpentries-lab:gh-pages from kerchner:patch-4

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kerchner commented Jul 6, 2025

Fixes #86


          Adds --gzip-compressed flag to kraken2 - Fixes carpentries-lab#86

6266a29

Fixes carpentries-lab#86

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kerchner commented Sep 15, 2025

As it turns out, the very latest version of kraken2, v2.1.6, is more tolerant of this, but it's probably best practice to make sure to use the flag.

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