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Adds --gzip-compressed flag to kraken2 - Fixes #86 #87

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Adds --gzip-compressed flag to kraken2 - Fixes #86 #87

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2 changes: 1 addition & 1 deletion _episodes/06-taxonomic.md
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Expand Up @@ -147,7 +147,7 @@ To run kraken2, we would use a command like this:
**No need to run this**
~~~
$ mkdir TAXONOMY_READS
$ kraken2 --db kraken-db --threads 8 --paired JP4D_R1.trim.fastq.gz JP4D_R2.trim.fastq.gz --output TAXONOMY_READS/JP4D.kraken --report TAXONOMY_READS/JP4D.report
$ kraken2 --db kraken-db --threads 8 --paired --gzip-compressed JP4D_R1.trim.fastq.gz JP4D_R2.trim.fastq.gz --output TAXONOMY_READS/JP4D.kraken --report TAXONOMY_READS/JP4D.report
~~~
{: .language-bash}

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