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add Pore-C pipeline

Status: Open.

#540 In imgag/megSAP;

· marc-sturm opened on Jul 17, 2026

Add special calling for pseudogenes e.g. for STRC

Status: Open.

#536 In imgag/megSAP;

· marc-sturm opened on Jul 14, 2026

add script to transfer a processed sample from one GSvar/megSAP instance to another

Status: Open.

#534 In imgag/megSAP;

· marc-sturm opened on Jul 6, 2026

LongReads: add methylation info to RE

Status: Open.

#532 In imgag/megSAP;

· leonschuetz opened on Jul 2, 2026

Update megSAP/GSvar docu

Status: Open.

#530 In imgag/megSAP;

· marc-sturm opened on Jul 1, 2026

Benchmark PacBio tools for SVs and REs

Status: Open.

#529 In imgag/megSAP;

· marc-sturm opened on Jun 30, 2026

Performance Somatic

Status: Open.

#528 In imgag/megSAP;

· Ott-Alexander opened on Jun 25, 2026

benchmarks for megSAP 2026_06

Status: Open.

#527 In imgag/megSAP;

· marc-sturm opened on Jun 23, 2026

refactor burden test

Status: Open.

#525 In imgag/megSAP;

· leonschuetz opened on Jun 18, 2026

LongReads: Annotate INS to RE calls

Status: Open.

#524 In imgag/megSAP;

· leonschuetz opened on Jun 11, 2026

Apptainer command still uses singularity

Status: Open.

#522 In imgag/megSAP;

· caspargross opened on May 28, 2026

LongReads: integrate wf-human-variation

Status: Open.

#521 In imgag/megSAP;

· leonschuetz opened on May 21, 2026