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@libscran

libscran

C++ libraries for single-cell analysis
README.md

C++ libraries for single-cell analysis

This organization contains bits and pieces of C++ code for single-cell analysis. Most of this was originally taken from the scran R package, with some refactoring to enable re-use outside of R.

Developers can check out the scran-cli repository to see how the various libscran components fit together. For actual analyses, users are referred to the R, Python or Javascript bindings.

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  1. umappp umappp Public

    C++ port of the UMAP algorithm

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  2. qdtsne qdtsne Public

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  3. scran.chan scran.chan Public

    A slimmed down version of scran, based on the C++ library of the same name.

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  4. scranpy scranpy Public

    Single-cell data analysis, from C++ to Python

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  5. libscran libscran Public archive

    scran, but in C++.

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  6. scrapper scrapper Public

    R bindings to C++ code for single-cell analysis

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